Pairwise Alignments

Query, 223 a.a., ribosomal protein S3 (NCBI) from Rhodospirillum rubrum S1H

Subject, 233 a.a., 30S ribosomal protein S3 from Vibrio cholerae E7946 ATCC 55056

 Score =  291 bits (745), Expect = 7e-84
 Identities = 145/232 (62%), Positives = 178/232 (76%), Gaps = 9/232 (3%)

Query: 1   MGQKVNPIGLRLGINRTWDSRWFAG-RDYASLLHQDLAIKKYLKSKLAQAGVSRIVIERP 59
           MGQKV+P G+RLGI + W++ WFA  +D+A  L  D  +++YL  +LA A +SRIVIERP
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQYLSKELANASLSRIVIERP 60

Query: 60  AKKARITIHTARPGVVIGKKGQDIENLRKKLQVMTGNEVHLNIVEIRKPELDAQLVAENI 119
           AK  R+TIHTARPGVVIGKKG+D+E LR  +  + G    +NI E+RKPELD QLVA++I
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 120 AQQLERRVAFRRAMKRAVQSAMRLGALGIRINCGGRLGGAEIARTEWYREGRVPLHTLRA 179
           A QLERRV FRRAMKRAVQ+AMRLGA GI++   GRLGGAEIAR+EWYREGRVPLHTLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 180 DVDYGTAAAHTTYGVCGVKVWVFKGEIM--------EHDPMAQDKRSQDQGR 223
           D+DY T++AHTTYGV GVKVW+FKGEI+          +P A   + Q +GR
Sbjct: 181 DIDYATSSAHTTYGVIGVKVWIFKGEILGGMPAATEAAEPKADKPKKQRKGR 232