Pairwise Alignments

Query, 309 a.a., Histone deacetylase superfamily (NCBI) from Rhodospirillum rubrum S1H

Subject, 343 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Pseudomonas fluorescens FW300-N2E2

 Score =  109 bits (272), Expect = 1e-28
 Identities = 76/222 (34%), Positives = 112/222 (50%), Gaps = 14/222 (6%)

Query: 75  GTYHIDGDTVMSPDSGEAALRAAGGMVQAVDAVMDKSVRNAFVAVRPPGHHAELATAMGF 134
           G Y  DG   ++  + +AA  AA   + A  A + +  R+AF   RPPGHHA      G+
Sbjct: 110 GYYSFDGGAPITAGTWQAAYSAAQVALTA-QAEIQRGARSAFALCRPPGHHAAGDLMGGY 168

Query: 135 CLFNNAAIGAYHARARWGAERVAVIDWDVHHGNGTQHIFWDDPAMFYASTH---EAHSFP 191
           C  NNAAI A  A    G ++VA++D D HHGNGTQ IF++   + +AS H   EA    
Sbjct: 169 CYLNNAAIAA-QAFLDQGHQKVAILDVDYHHGNGTQSIFYERSDVLFASIHGHPEAEFPF 227

Query: 192 NTGFVDETG---GHGNIVNCPLRSGADGLRFREAFTERITPALRAFAPDLIIISAGFDAH 248
             G+ DE G   G G   N PL +G+ G     A  E+    +R +  D+I++S G D  
Sbjct: 228 FLGYADEQGEGDGEGFNFNYPLPAGS-GWDTWSAALEQACGQIRGYDADVIVVSLGVDTF 286

Query: 249 VMDPMANLNLKVADFVWATEQVLDVANDVCDSRVVSVLEGGY 290
             DP++   L   D++   +++  +         + V+EGGY
Sbjct: 287 KDDPISQFKLDSPDYLAMGKRIAALGKP-----TLFVMEGGY 323