Pairwise Alignments

Query, 309 a.a., Histone deacetylase superfamily (NCBI) from Rhodospirillum rubrum S1H

Subject, 306 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Pseudomonas stutzeri RCH2

 Score = 77.4 bits (189), Expect = 4e-19
 Identities = 59/208 (28%), Positives = 89/208 (42%), Gaps = 15/208 (7%)

Query: 86  SPDSGEAALRAAGGMVQAVDAVMDKSVRNAFVAVRPPGHHAELATAMGFCLFNNAAIGAY 145
           SP+  +  +RA GG + A +  +   +           HHA    A GFC+FN+ A+ A 
Sbjct: 85  SPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGT---HHAHRDHASGFCIFNDLAVIAL 141

Query: 146 HARARWGAERVAVIDWDVHHGNGTQHIFWDDPAMFYASTHEAHSFPNTGFVDETGGHGNI 205
           +        RV + D DVH G+GT  I  + P     S H   +FP       T    + 
Sbjct: 142 YLLESGRVGRVLIFDCDVHQGDGTARILENIPDAVTVSLHCEKNFP-------TRKAHSD 194

Query: 206 VNCPLRSGADGLRFREAFTERITPALRAFAPDLIIISAGFDAHVMDPMANLNLKVADFVW 265
            + PL  G     + +   + +   L  + PDL++  AG D H  D +  L+L  A    
Sbjct: 195 WDIPLPPGMGDEAYLKVVHDTLNYLLPIYQPDLVLYDAGVDVHRDDALGLLSLSDAGLAA 254

Query: 266 ATEQVLD--VANDVCDSRVVSVLEGGYD 291
               VLD  +  D+    VV ++ GGYD
Sbjct: 255 RDSAVLDHCLGRDI---PVVGLIGGGYD 279