Pairwise Alignments

Query, 678 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI) from Rhodospirillum rubrum S1H

Subject, 1010 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  303 bits (776), Expect = 3e-86
 Identities = 170/422 (40%), Positives = 246/422 (58%), Gaps = 6/422 (1%)

Query: 248  ATRDPLTDLPNRSLILEMMDATINRVALDGGRCAVMFLDLDMFKHVNDSLGHEAGDLILK 307
            A  DPLT LPNR ++LE ++  I R+  +    A+MFLDLD FK VND+LGH+ GDL+L+
Sbjct: 581  ANYDPLTGLPNRRMLLEYLNTEILRIDRNHSHFALMFLDLDFFKEVNDTLGHDMGDLLLQ 640

Query: 308  DIGRRFDAVVAGLGAVGRLGGDEFVVLIDRYEREDDLARIARRLITTVKRPIEVDGTLVH 367
            +  +R    +     V RLGGDEF V++   +    + R+A+ ++  +  P  +     +
Sbjct: 641  ETAKRLKGCIRESDVVARLGGDEFTVVLSGIDSPSGVERVAQSILERIAEPYSLGDETAY 700

Query: 368  SSTSVGIACYPVDGATPQGLLRNADTAMYAVKASGPGQWAFFDRSMTENALVRLRTEASL 427
             S S+GI  YP D  + +GLL++AD AMYA K  G  ++ +F  SM E A  R+     L
Sbjct: 701  ISASIGITIYPDDATSIEGLLKHADQAMYAAKEQGRNRFHYFTPSMQEYARYRMALIKDL 760

Query: 428  RSAIEKGQFVLHYQPKLDLRSNRISGCEALIRW-DLNGDLVPPGRFISIAEETGMIYDIG 486
            R+AI + +F L YQP +D+    +   EALIRW      LV PG FI +AEETG+I +IG
Sbjct: 761  RNAINRKEFELFYQPIVDMNKLGVYKAEALIRWVHPQRGLVSPGEFIPVAEETGLINEIG 820

Query: 487  LWVLREACQAQRRWR-RHAGAVPIAINVSVRQLKDE-RFIDDFLDIIQASGADPELLEVE 544
             WV  +A Q   RWR +H   + I+IN S  Q +DE     D+L +++        + VE
Sbjct: 821  NWVFEKAAQQSARWRTQHGVEIQISINKSPIQFRDEGDTFSDWLALLRHLELSSNAICVE 880

Query: 545  VTESALMSSIEVSAHLLREMRSHGVRLSIDDFGTGYSSLAYLKNLPIDILKIDRSFVSDL 604
            +TE  L+ +       L   R  G+++S+DDFGTGYSSLAYLK   ID LKID+SF  +L
Sbjct: 881  ITEGLLLDASMGVTDKLLAYRDAGIQVSLDDFGTGYSSLAYLKKFDIDYLKIDQSFTRNL 940

Query: 605  PEES---SIPRMIIGLAGQMGLRTVAEGIETEGQLAWLRDNGCDMIQGFLIEKPLPEADF 661
              +S   ++   II +A ++G++ +AEG+ET+ Q   L   GCD  QG+L  KP+   +F
Sbjct: 941  ESDSDGVALCEAIIVMAHKLGIKVIAEGVETQFQHDILASAGCDFAQGYLYSKPVSLPEF 1000

Query: 662  LR 663
             R
Sbjct: 1001 ER 1002