Pairwise Alignments

Query, 229 a.a., Flagellar hook capping protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 235 a.a., flagellar hook assembly protein FlgD from Vibrio cholerae E7946 ATCC 55056

 Score = 53.5 bits (127), Expect = 3e-12
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 13/212 (6%)

Query: 1   MSTITSTSSTETSGKATSTSAESLSKLDENYKLFLTVLTTQLKNQNPLNPTDPNEMTQQL 60
           +S I    + +   K   T+ +   K ++    FL++LT QL  Q+P  P   ++M  Q+
Sbjct: 12  LSYIDQLKALQEQKKPDETTGQKSLKQED----FLSLLTKQLAQQDPFKPVSNDQMIAQM 67

Query: 61  ISYSQVEQQILGNQYLENLVLSTNNQTAETALAFVGKEVVYTSDNREFSGEKIDWKMT-- 118
            S++ V+     N   E+L  S  +  A  A + VG++V+          +K D  M   
Sbjct: 68  ASFATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPG---AAGMKKPDGGMAAM 124

Query: 119 --VPESAKSVSFVVTNAKGDVIYS-KTETPESGAYTFTWDGATTAGSKAVDGSYTLTAKA 175
             +P+S  ++   + N  G ++ +       SG     WDG    G+    G Y + A  
Sbjct: 125 VKLPQSIDNLFIRIENEAGQLVRTFDVGAKSSGDNRVEWDGKDQNGNPLPGGKYKVKASG 184

Query: 176 TLADDKTKTIDLQSTSTVAEVDWSSGAAQLKL 207
            L D ++K  ++ + + V  V    G   + L
Sbjct: 185 -LLDGESKEFEVSTYANVNSVLLGKGDGNVLL 215