Pairwise Alignments

Query, 750 a.a., Penicillin-binding protein 1A (NCBI) from Rhodospirillum rubrum S1H

Subject, 861 a.a., 1A family penicillin-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  166 bits (419), Expect = 6e-45
 Identities = 116/310 (37%), Positives = 168/310 (54%), Gaps = 18/310 (5%)

Query: 37  RIALAIAGVVLALGV-LVLAINLYTMPLSPS--------FQEPERSGFLIADAEGTVVAT 87
           RI +A+  + L LG+  + A   Y +P  P          Q P R    I  A+G +++ 
Sbjct: 6   RITIALFSLAL-LGIGAIAAAYFYVLPDLPDVTTLKTVKLQTPLR----IYSADGKLISQ 60

Query: 88  RGVTAGRPVALAEMPASLVNAVIAFEDRRFRDHWGVDPRGIARAIWVNLRSGGRTQGAST 147
            G     PV   ++P  L+NAV+  ED RF +H G+DP GI RA  +   +G ++QGAST
Sbjct: 61  FGEKRRIPVEYEQVPQQLINAVLDTEDARFFEHKGIDPIGIIRAAVILATTGKKSQGAST 120

Query: 148 LTQQLVKNTLLTPEKTFTRKIQEAMLALWIERKLTKDEILERYLNSLYLGAGSYGVDAAA 207
           +TQQ+ +   L+ EKT+ RKI+E  LAL IE+ L+K EIL  YLN  +LG  +YGV AAA
Sbjct: 121 ITQQVARGFFLSREKTYIRKIKEIFLALKIEQALSKKEILTLYLNRSFLGNRAYGVGAAA 180

Query: 208 RRYFNKPVTDLSLAESAMIAGLIQAPARTGPTTALDVARQRAELVLDVMRDQGLIGADEA 267
           + Y+ K + +L+L E AMIAGL QAP+   P      A  R   VL  M ++  I  DE 
Sbjct: 181 QVYYGKELEELTLPEMAMIAGLPQAPSAANPIRNPARAMNRRNWVLSRMLEKENITPDEY 240

Query: 268 TWAKAHPASLAVPPVELPAYGA-VSDWIADEARKALG---PLSGDFLVVSTLDRRLQVLA 323
             A   P +      E+  Y   +S+   D   + LG     +G + V +T+D RLQ+LA
Sbjct: 241 QEAIRAPITAKYHGAEVELYAPYISEMARDYLVEKLGEEEAYTGGYNVYTTVDSRLQMLA 300

Query: 324 QQTIQEGMAA 333
           Q+ ++  + A
Sbjct: 301 QEALRNNVYA 310



 Score = 81.6 bits (200), Expect = 2e-19
 Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 9/168 (5%)

Query: 343 AALVAMAP-DGRVLAMVGGRDYQESQFNRAVQARRQPGSIFKLFVYLTALSNNWRPDDPI 401
           +A+V++ P DG +  +VGG  +  SQ+NR  QA+RQ GS  K F+Y  AL   +     I
Sbjct: 429 SAIVSLDPKDGAIRTLVGGYSFHTSQYNRVTQAKRQLGSNIKPFIYTGALEKGYTLATLI 488

Query: 402 DDTPLTI------DGWSPENYGGGAGHGSVPLRVAFAHSYNLAAVRLQEAVGREAVIATA 455
           ++ P+          W P+N       G   LRV  A S N+ +VR     G E+ I T 
Sbjct: 489 NNAPINNADIRQGTAWRPKN-SPDKYTGPTRLRVGLAQSINVMSVRAMRYTGLESAIDTL 547

Query: 456 RSMGL-KDDLQPLPSLALGTFPATLLDLTSAFAAVAADRATVQPRVIE 502
              G  +DDL    SLALG+   T L + +AF+  A     V+P  I+
Sbjct: 548 VKFGFDRDDLPQNESLALGSPSVTPLQVVTAFSVFANGGYRVEPYFID 595



 Score = 50.8 bits (120), Expect = 3e-10
 Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 553 GKTGTTQDNRDAWFIGFAGNLVIGVWVGNDDETPMTGISGGGLPAKLWQSFAAR-ALAGG 611
           GKTGTT +++D WF GF   L   VWVG DD +   G +        W +  A+  ++G 
Sbjct: 721 GKTGTTNESKDTWFSGFTPTLATTVWVGFDDHSIELGRTA-------WNTNGAKDQISGA 773

Query: 612 VAGSAPAAPIAAATTATLPAAAPPAPTPAP 641
            AG+  A P             P  P+P P
Sbjct: 774 EAGAKTAGPGWNEFMKNALQGTPELPSPPP 803