Pairwise Alignments

Query, 563 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  149 bits (377), Expect = 2e-40
 Identities = 154/594 (25%), Positives = 264/594 (44%), Gaps = 75/594 (12%)

Query: 1   MLANIRIAGKIGI--VIAIMAVAAIIISTVGFMGMRTLGEAARQIDGYG-DMIKTGARMN 57
           ML+++R   K+ +  VI ++ + A++++     G+ TL    ++++ Y  D+I    +  
Sbjct: 6   MLSSLRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTL---QKELENYRTDLIDAKKKEL 62

Query: 58  QNLLTM----------------SRAEYRMAANPAEFEDAYGFFSKNKAQFEERITTLEGM 101
           Q  L M                ++A+ +       F+    FF+ +     + + TL  +
Sbjct: 63  QAYLMMGVTAVKPLYESDKAGENQAQAKQILKAMRFDSDGYFFAYDS----QGVNTLHAI 118

Query: 102 LPASHLSEIATLRENFVNYLAAAEKTIATARANQGATIGEAQRQIYDAVTVSRAISN--P 159
            P      +  +++   N +A     I  ++   G       +   +A       +   P
Sbjct: 119 KPELEGKNLYGMKDE--NGVAVIAGLIDASKTGDGFLYFSWHKPTINAQAPKLGYAEYLP 176

Query: 160 LLDSTLALSDDLDDEGTKVGD-----AADATFQTLTRWMFGVAFGGIVLGVIAGLLIARR 214
             D  L     +DD  T+V +      AD   Q ++    G++  G+V  +IA  ++  R
Sbjct: 177 KWDWVLGTGIYIDDVDTQVAEFRAQREADLYDQMISA--IGLSVVGLVFTIIAVSVLVSR 234

Query: 215 GMVQPIGSLVGSLQALTAG--DLERAIDGTERKDEVGDIARSALIFRDNARKAQELREAQ 272
           G + P+  +V SLQA+ AG  DL   I   E +DE+GD+A++   F D          A 
Sbjct: 235 G-IAPLQHVVSSLQAVAAGGGDLTARIK-VESQDEIGDVAKAFNAFMDKLHPLMTDIRAS 292

Query: 273 AAEQVARAKRSAAIESLTRDFDHAVSDVLGVVAGACAEMETTAGG---LSATADQTNIQA 329
           A            +E+  ++ D   S     + G C E +        +SATA +     
Sbjct: 293 AN----------TVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVASNT 342

Query: 330 SAVATATEQASASVQTVATAAEELSASISEIGRRMEQSSHVAQIASQEAAQTNATVQSLA 389
            + A A E A++ +   A A +E++ +I  IG  +            E  QT+A V  L+
Sbjct: 343 YSTAQAIESANSQI---AVAQKEVNLAIDGIGELVN-----------EVNQTSAAVGDLS 388

Query: 390 DTSARIGAVIGLITDIANQTNLLALNATIEAARAGEAGKGFAVVAGEVKHLASQTAKATE 449
             +A+I  V+ +I DIA QTNLLALNA IEAARAGE G+GFAVVA EV+ LAS+T  +T+
Sbjct: 389 QQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNSTK 448

Query: 450 DIGTQIGAVQEATEGAVKAIASIVRRIE-------EINTISAAIAAAVEEQSAATAEIAR 502
           +IG  + A+ +    AV+++     R E       +I    A I+ AV        + A 
Sbjct: 449 EIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQTAS 508

Query: 503 NVQQAAAGTQEVSDTIVGVSSSAGETGNASQQVLSAAQALSKEAVALKGLVERF 556
             +Q +A  ++++  +V +     E   + +Q  S + +LS     +  LV  F
Sbjct: 509 AAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQMGTLVGHF 562