Pairwise Alignments

Query, 357 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 245 a.a., choline uptake ABC transporter permease from Sinorhizobium meliloti 1021

 Score = 92.4 bits (228), Expect = 1e-23
 Identities = 58/208 (27%), Positives = 106/208 (50%), Gaps = 9/208 (4%)

Query: 112 GSLISMTLIGLIGAWSEAMLTLSLVLTSVMFCIALGLPSGILMARSDRLAKLSRPLLDAM 171
           GSL  +T++ L   +   + T++  + +V   I +   +G           LSR L++  
Sbjct: 45  GSLFWLTVLHLRTVF---VATVAATIVAVSLAIIVTRKAGA------EFLPLSRSLVNIG 95

Query: 172 QTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPLIRLTNLGIRQVPEDLVEAARSFGAS 231
           QT P    L   V ++G G  P ++   ++ L P+      G+  +P  ++EAAR  G +
Sbjct: 96  QTFPPVAVLALAVPIYGFGEKPTLIALFLYGLLPIFENALTGLTTLPPTVMEAARGAGMT 155

Query: 232 KTQLLTKVQLPLALPTIMAGINQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLAT 291
             Q L +++LPLALP I+ GI  +++++L+   I S +A   LG++++ G+   ++    
Sbjct: 156 GRQRLFRIELPLALPVILTGIRLSVVISLATATIGSTVAARTLGEVIIAGLQSNNLAFVL 215

Query: 292 VGGVAIVLLAILIDRLTQSMGVASAAQA 319
            GG+ +  LA+LI    Q +  A A +A
Sbjct: 216 QGGLIVGALAVLIHDALQGLERAFAGRA 243