Pairwise Alignments

Query, 550 a.a., PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

Subject, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score = 93.2 bits (230), Expect = 5e-23
 Identities = 109/398 (27%), Positives = 171/398 (42%), Gaps = 45/398 (11%)

Query: 169  LLDTTLETIAQGIILVDPSLHIVLCNRRYRELLDLPDYMLEPFPPRAADIIAFQ-----I 223
            LL   +E I QGI +VD  L +V  N+RY EL + P  +++   P  AD+I         
Sbjct: 629  LLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRP-IADVIRHNAQQGLC 687

Query: 224  GRGDFDILPADVTHRPFWDRIEGFVFSPGTTERPLRDGRTLGVETFALDGGGWVRTFTDI 283
            G GD    P D   R  +   +G   +  T+ R   DGR + V+   + GGG+V +FTDI
Sbjct: 688  GPGD----PEDHVRRRVYHLEQG---TSHTSSRVRADGRVIEVQGNPMPGGGFVMSFTDI 740

Query: 284  TEGKRAQDALLVSEKMASLGQLVAGIAHE-INTPIGTGV--------TAASLLAEKTQSL 334
            T  + A+ +L ++ +      L   +  E +N  + T          + +  LA  +  L
Sbjct: 741  TVFREAEQSLKMANETLEERVLQRTLELEKLNKQLVTATQRSERESQSKSRFLAAVSHDL 800

Query: 335  VQAVEAGALRRSQLDAYLHVARES-----SRFILSNLTRAAELIQSFKQVAVDQATD--- 386
            +Q + A  L  S L     VA+E+     +  I S L  A +LI     ++  ++     
Sbjct: 801  MQPLNAARLFASSLS---EVAKEAEVQKLAHHIESALGAAEDLISDLLDISRLESGKIDL 857

Query: 387  ESRLFKVRDYLEEILLSLQPRLKRTPHTMTLECPDDLAMYGPPGALFRVITNLVINSLMH 446
                F + D L  +         +     +L  P  L ++  P  L RVI N + N+  +
Sbjct: 858  HPHSFAIMDVLSNLNAEFSALAAKQGVQFSL-VPSLLWVHSDPKLLRRVIQNFLTNAFRY 916

Query: 447  GLEEGATAPPGHMVLRVGHEKDTDCVVFRYHDTGRGIPEKNLKRIFDPFFT--TRRGEGG 504
                    P G ++L V     T  V     D G GI +   + IF+ F      R + G
Sbjct: 917  N-------PNGKVILGV-RRVATGQVRIDVWDNGIGIEQDKQQEIFEEFNRGGQVRSDQG 968

Query: 505  TGLGLHIVYNLVTQTLGGSLAVHSPPGQGAIFLIRVPR 542
             GLGL I    +   LG  +++ S PGQG++F I + R
Sbjct: 969  LGLGLAISKG-IAHVLGHHISMRSWPGQGSVFSITLDR 1005



 Score = 63.2 bits (152), Expect = 5e-14
 Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 9/138 (6%)

Query: 43  IEHMDQGVLVADAKTRVIAWNRRACELLGVSADFLASGPTHVEVLGEMIRTGALVTAEID 102
           IEH+ QG+ V D + R++AWN+R  EL       +  G    +V+    + G  +    D
Sbjct: 634 IEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIADVIRHNAQQG--LCGPGD 691

Query: 103 PVSTLIAAWLDLPEGERRPLIYERGNPTGLRIEVRTSPLPEGGYVRTFTDITQRKAAEQA 162
           P   +      L +G        R +  G  IEV+ +P+P GG+V +FTDIT  + AEQ+
Sbjct: 692 PEDHVRRRVYHLEQGTSHTSSRVRAD--GRVIEVQGNPMPGGGFVMSFTDITVFREAEQS 749

Query: 163 L--AEKT---RLLDTTLE 175
           L  A +T   R+L  TLE
Sbjct: 750 LKMANETLEERVLQRTLE 767