Pairwise Alignments

Query, 550 a.a., PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

Subject, 917 a.a., sensory histidine kinase from Sinorhizobium meliloti 1021

 Score = 93.2 bits (230), Expect = 4e-23
 Identities = 113/474 (23%), Positives = 199/474 (41%), Gaps = 50/474 (10%)

Query: 86  VLGEMIRTGALVT-----AEIDPVSTLIAAWLDLPEGERRPLIYERGNPTGLRIEVRTSP 140
           ++G ++  G+L+T     + + P+  L     DL EG     I E G    L    RT  
Sbjct: 205 LVGGVVLIGSLLTLLVLRSIVGPLRRLNRVIGDLTEGRYDVDIPEEGGDE-LGAMARTLS 263

Query: 141 LPEGGYVRTFTDITQRKAAEQALAEKTRLLDTTLETIAQGIILVDPSLHIVLCNRRYREL 200
           L     +       ++K  E     + R +   LE I+ G +L D    I++ N +Y E+
Sbjct: 264 LFRESAI-------EKKKLEDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYCEI 316

Query: 201 LDLPDYMLEPFPPRA-ADIIAFQIGRGDFDILPADVTHRPFWDRIEGFVFSPGTTERPLR 259
              P +       R+  +I+   +  G  D L          +R+       G  +    
Sbjct: 317 F--PSHKPNTLRGRSFREIVEQNLEMGQVD-LEGKSPQEWVDERVRLHRDPAGLVDEKRF 373

Query: 260 DGRTLGVETFALDGGGWVRTFTDITEGKRAQDALLVSEKMA-----SLGQLVAGIAHEIN 314
             + + +    +  GG V  +TDIT+ K+ Q  L  ++  A     +  + +A ++HE+ 
Sbjct: 374 GDKWVRISKRKIPDGGTVAVYTDITQLKQRQVELERAKSHAESANEAKSRFLASMSHELR 433

Query: 315 TPIGTGVTAASLLAEKTQSLVQAVEAGALRRSQLDAYLHVARESSRFILSNLTRAAELIQ 374
           TP+   +  + +L E         EA      +L   L     + R +LS +    +L  
Sbjct: 434 TPLNAIIGYSEMLIE---------EARDHEDEELVPDLDKIASAGRHLLSLINDILDL-- 482

Query: 375 SFKQVAVDQATDESRLFKVRDYLEEILLSLQPRLKRTPHTMTLECPDDLA-MYGPPGALF 433
              ++  ++       F V D L ++  ++ P + R  +  T +   DL  M+     L 
Sbjct: 483 --SKIEANKMEVFLETFSVADLLRDVAATVAPLMARNGNEFTQDFEADLGEMHSDQTKLR 540

Query: 434 RVITNLVINSLMHGLEEGATAPPGHMVLRVGHEK--DTDCVVFRYHDTGRGIPEKNLKRI 491
           + + NL+ N+             G + LRV  E+  D D +VF+  DTG G+  +  +R+
Sbjct: 541 QNLFNLLSNAAKF-------TNGGRVTLRVRREQRPDRDWLVFQVTDTGIGMSPEQQERL 593

Query: 492 FDPF----FTTRRGEGGTGLGLHIVYNLVTQTLGGSLAVHSPPGQGAIFLIRVP 541
           F+ F     +T R  GGTGLGL I  +   + +GG + V S  G+G++F + VP
Sbjct: 594 FNAFTQADASTTRNYGGTGLGLSITRSF-CRMIGGVVTVESEVGKGSVFTMEVP 646



 Score = 34.7 bits (78), Expect = 2e-05
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 21/130 (16%)

Query: 43  IEHMDQGVLVADAKTRVIAWNRRACELLGVSADFLASGPTHVEVLGEMIRTGALVTAEID 102
           +E +  G ++ D++ R++  N + CE+          G +  E++ + +  G     ++D
Sbjct: 290 LEVISDGFVLYDSEDRILVANSKYCEIFPSHKPNTLRGRSFREIVEQNLEMG-----QVD 344

Query: 103 PVSTLIAAWLDLPEGERRPLIYERGNPTGLRIEVRTSP---------LPEGGYVRTFTDI 153
                   W+D    ER  L     +P GL  E R            +P+GG V  +TDI
Sbjct: 345 LEGKSPQEWVD----ERVRL---HRDPAGLVDEKRFGDKWVRISKRKIPDGGTVAVYTDI 397

Query: 154 TQRKAAEQAL 163
           TQ K  +  L
Sbjct: 398 TQLKQRQVEL 407