Pairwise Alignments

Query, 1301 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation (NCBI) from Rhodospirillum rubrum S1H

Subject, 778 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  393 bits (1009), Expect = e-113
 Identities = 259/675 (38%), Positives = 375/675 (55%), Gaps = 35/675 (5%)

Query: 646  DGHW--LRVNHKLCDIVGYPPDELLT---LSFQDITHPDDLRADLRQMEALLAGQIDTYT 700
            D  W  + V+     + GY   EL+    ++++ ITH DD     R +E  +A  +  + 
Sbjct: 111  DASWTMIFVSQGALGLCGYSAAELVDETRITWERITHADDRLRVRRCIEQAVAA-VGRFC 169

Query: 701  IEKRYIRKTGESLWINLTVSLVRDIHNAPAYFISVVENIQSRK-------EAELQLLLAS 753
            +  R    +G   W+      V D           +E+I +++       +AEL+     
Sbjct: 170  VHYRIRTASGAHKWVIERGVAVAD-EQGEIVVEGFIEDITAQRAILDALEQAELRY---R 225

Query: 754  AVFSNSMEGIFVTDLKGSILAVNPAFSQITLYEAA-EVLGRNARI-----LQSGRQNREF 807
            ++F N+ EGIF +   G  LA NPA ++I  Y++A E++   A I     ++ GR  RE 
Sbjct: 226  SIFENASEGIFQSTRDGRYLAANPALARIYGYDSATELVADLADIERRLYVEGGR--REA 283

Query: 808  YVALWQDVLTIGSWRGEIWNRRRDGEVFPEWLSISS--VRNHQGEVTNYIGIFSDLSRIK 865
            +  L +    + ++  E++  RRDG     W+S ++  VR   GE   Y G   D+S  K
Sbjct: 284  FCRLMEHQGEVLNFESEVY--RRDGTRI--WISENAHVVRGANGEFICYEGTVQDISERK 339

Query: 866  HSEAKFHHLAHHDPLTGLPNRLLLRSRLDHAIERARRTGGRCAVLFLDLDRFKMINDSLG 925
            H + +    A+HD LTGLPNR+LL  R++  + RA R G    ++F+DLD FK IND LG
Sbjct: 340  HYQQQLERQANHDLLTGLPNRILLNDRIEQGLARAARLGYYLTLVFIDLDNFKFINDGLG 399

Query: 926  HRAGDTLLRTLGARLTACLGDTGTLARLGGDEFVAVIEDIDGIPAVGTIALTMLERLREP 985
            H AGD LL+++ ARL   L  + T+AR+GGDEFV V+ D   I  V ++   +L  +R P
Sbjct: 400  HVAGDELLKSIAARLAGSLRGSDTVARVGGDEFVLVLSDHYRISTVISLLERVLNEIRRP 459

Query: 986  CRLSEGPEVCIGGSVGISLFPEDGDNPDTLLQHADTALGQVKGAGGGAYGFYTRTLTERI 1045
              L+ G E  +G S+G+++FP DG++  TLL+HAD A+   K  G   + F+T  L    
Sbjct: 460  VTLA-GREFQVGASIGVAMFPGDGEDAQTLLKHADIAMYAAKKRGRNNFQFFTHDLNRIA 518

Query: 1046 SARLGLEAGLRHALEQGDFLLHYQPLIALGTGEVEGVEALVRWAGGDGLLIPPDRFIPLA 1105
              RL LEA +R ALE+ +F +HYQP +   +  + GVEAL RW      +I PDRFIP+A
Sbjct: 519  DERLNLEAAMRAALERDEFSVHYQPKVD-ASRRIVGVEALARWTDAQLGVIGPDRFIPVA 577

Query: 1106 EDTGLIVPLGEWVLGEACRTMQRWRS-QGMPLTVLAVNLSPRQFRDHAIPALVRRVLEQT 1164
            E++GLI+PL   VL  A    ++W + + +PL V AVNLSP  F    +   V  VL+  
Sbjct: 578  EESGLIMPLTLAVLRRAFSDARQWNAGRAIPLMV-AVNLSPLLFLGDDVVDRVCTVLDDV 636

Query: 1165 GLPASVLELEITESAIMEQGAAAEAQMTGLKHLGVRLAIDDFGTGYSSLANLRRFPIDKI 1224
            GLP + +ELEITE+  +  G  A A +   K  G RLA+DDFGTGYS+L+ LRRFP+D I
Sbjct: 637  GLPPNQVELEITETVFLGDGTRAVAILAEFKARGFRLAMDDFGTGYSALSYLRRFPLDII 696

Query: 1225 KIDQSFVRDIPRDAAAEEITATIIAMGRTLKLHVLAEGVETTDQLDFLSRKQCDSAQGYL 1284
            KID+S V  + ++     I    I++G++L   V+AEGVE   Q DFL R  CD  QGYL
Sbjct: 697  KIDRSLVTGLEQEEEVAMIARAAISLGKSLHKTVVAEGVENAAQFDFLCRNGCDEFQGYL 756

Query: 1285 FSRPITAAALEKWLA 1299
             SRP+ AA     LA
Sbjct: 757  LSRPLPAAQFTALLA 771



 Score = 52.8 bits (125), Expect = 1e-10
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 4/145 (2%)

Query: 609 DGLIADHRRKQMVL---RESEARFRATFEQAAVGIAHLDPDGHWLRVNHKLCDIVGYPPD 665
           +G I D   ++ +L    ++E R+R+ FE A+ GI     DG +L  N  L  I GY   
Sbjct: 201 EGFIEDITAQRAILDALEQAELRYRSIFENASEGIFQSTRDGRYLAANPALARIYGYDSA 260

Query: 666 ELLTLSFQDITHPDDLRADLRQMEA-LLAGQIDTYTIEKRYIRKTGESLWINLTVSLVRD 724
             L     DI     +    R+    L+  Q +    E    R+ G  +WI+    +VR 
Sbjct: 261 TELVADLADIERRLYVEGGRREAFCRLMEHQGEVLNFESEVYRRDGTRIWISENAHVVRG 320

Query: 725 IHNAPAYFISVVENIQSRKEAELQL 749
            +     +   V++I  RK  + QL
Sbjct: 321 ANGEFICYEGTVQDISERKHYQQQL 345