Pairwise Alignments

Query, 1301 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation (NCBI) from Rhodospirillum rubrum S1H

Subject, 837 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  481 bits (1238), Expect = e-139
 Identities = 266/657 (40%), Positives = 388/657 (59%), Gaps = 4/657 (0%)

Query: 644  DPDGHWLRVNHKLCDIVGYPPDELLTLSFQDITHPDDLRADLR-QMEALLAG-QIDTYTI 701
            D  G ++ +NH +    G   ++LL  +  +I  P+     ++   E+++ G Q+     
Sbjct: 182  DVAGRYVLINHSVEIAWGRSKEQLLNRTDDEIFSPELAEEFVQGDYESIVRGVQVTAAEC 241

Query: 702  EKRYIRKTGESLWINLTVSLVRDIHNAPAYFISVVENIQSRKEAELQLLLASAVFSNSME 761
            E + I ++    W+  T   V          I +  NI S K A+ QL LA+ +F NS+E
Sbjct: 242  EAKDIDQSNS--WLETTKVPVVSPDGTLEGVIGISRNITSHKAAQEQLELAANIFENSVE 299

Query: 762  GIFVTDLKGSILAVNPAFSQITLYEAAEVLGRNARILQSGRQNREFYVALWQDVLTIGSW 821
            G+ +TD  G+I+ V+ AF++IT Y   EVLG N RIL SGR ++ F+  LW+ +LT G W
Sbjct: 300  GVVITDASGNIIEVHGAFTEITGYSRDEVLGENPRILNSGRHDKAFFERLWRSLLTNGKW 359

Query: 822  RGEIWNRRRDGEVFPEWLSISSVRNHQGEVTNYIGIFSDLSRIKHSEAKFHHLAHHDPLT 881
             GEIWNRR+ G ++PE L+ISS+     +V  ++ +F+D+S  K SE +   L +HDPLT
Sbjct: 360  HGEIWNRRKSGAIYPEQLTISSMYGDDHQVRYFVAVFADISAQKQSEKELARLVYHDPLT 419

Query: 882  GLPNRLLLRSRLDHAIERARRTGGRCAVLFLDLDRFKMINDSLGHRAGDTLLRTLGARLT 941
             LPNR++L + L+  +  A R     A++F+D+D FK INDS GH  GD +L  +  RL 
Sbjct: 420  KLPNRMMLSANLEQELRHAAREETELALIFIDVDLFKHINDSYGHVTGDAILVEVARRLG 479

Query: 942  ACLGDTGTLARLGGDEFVAVIEDIDGIPAVGTIALTMLERLREPCRLSEGPEVCIGGSVG 1001
              LG+  TLARLG DEF+AV+  ++   +V  +   + E    P  L +   V +  S+G
Sbjct: 480  QKLGEEATLARLGSDEFIAVLPHVESDDSVSLMVSRLREAFDAPFLLDDEGSVRLTASMG 539

Query: 1002 ISLFPEDGDNPDTLLQHADTALGQVKGAGGGAYGFYTRTLTERISARLGLEAGLRHALEQ 1061
            ++++P DG++ DTLL++ADTA+ + K  G   Y FYT++LT      L L++ L  A+ +
Sbjct: 540  VAIYPGDGESGDTLLRNADTAMHRAKANGRNNYAFYTQSLTLASVEHLKLQSALHDAINK 599

Query: 1062 GDFLLHYQPLIALGTGEVEGVEALVRWAGGDGLLIPPDRFIPLAEDTGLIVPLGEWVLGE 1121
              F L YQP +ALGTG+  G EAL+RW       I P  FIP+AE+ GLI  +G WVL +
Sbjct: 600  DAFYLVYQPKLALGTGQCVGFEALLRWEDPQLGTISPAIFIPVAENIGLINEIGLWVLKQ 659

Query: 1122 ACRTMQRWRSQGMPLTVLAVNLSPRQFRDHAIPALVRRVLEQTGLPASVLELEITESAIM 1181
            A     +W ++G     ++VN++  Q +     A V+RVL++ GLP   LELE+TES +M
Sbjct: 660  AATQGAQWLAEGKRFGRISVNVAGPQLQQKQFCAQVKRVLDEAGLPPEYLELEVTESCMM 719

Query: 1182 EQGAAAEAQMTGLKHLGVRLAIDDFGTGYSSLANLRRFPIDKIKIDQSFVRDIPRDAAAE 1241
                A    +  L  LGV L++DDFGTGYSSL  L+R PI K+KIDQSF+RDIPRD    
Sbjct: 720  SDPLAVIEVLKQLGELGVELSVDDFGTGYSSLNYLKRLPIHKLKIDQSFIRDIPRDGNNT 779

Query: 1242 EITATIIAMGRTLKLHVLAEGVETTDQLDFLSRKQCDSAQGYLFSRPITAAALEKWL 1298
             I   +IA+G  L L ++AEGVET +Q  FL    CD AQGYL+S+P     L ++L
Sbjct: 780  AIAKAVIALGHALNLCIIAEGVETPEQAAFLEAAGCDQAQGYLYSKPRMVEELAEFL 836



 Score = 33.9 bits (76), Expect = 6e-05
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 633 FEQAAVGIAHLDPDGHWLRVNHKLCDIVGYPPDELLTLSFQDITHPDDLRADLRQM-EAL 691
           FE +  G+   D  G+ + V+    +I GY  DE+L  + + +      +A   ++  +L
Sbjct: 294 FENSVEGVVITDASGNIIEVHGAFTEITGYSRDEVLGENPRILNSGRHDKAFFERLWRSL 353

Query: 692 LAGQIDTYTIEKRYIRKTGESLWINLTVSLVRDIHNAPAYFISVVENIQSRKEAELQL 749
           L        I  R  RK+G      LT+S +    +   YF++V  +I ++K++E +L
Sbjct: 354 LTNGKWHGEIWNR--RKSGAIYPEQLTISSMYGDDHQVRYFVAVFADISAQKQSEKEL 409