Pairwise Alignments

Query, 1301 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation (NCBI) from Rhodospirillum rubrum S1H

Subject, 639 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  399 bits (1024), Expect = e-115
 Identities = 228/477 (47%), Positives = 299/477 (62%), Gaps = 15/477 (3%)

Query: 828  RRRDGEVFPEWLSIS--SVRNHQGEVTNYIGIFSDLSRIKHSEAKFHHLAHHDPLTGLPN 885
            R + GE    W++    +VR+ +G  T   G  +D++  K  E +  +LAHHD LTGLPN
Sbjct: 160  RAKSGEY--RWIASRGIAVRDARGVATLMAGSVTDITERKLHEERMRYLAHHDQLTGLPN 217

Query: 886  RLLLRSRLDHAIERARRTGGRCAVLFLDLDRFKMINDSLGHRAGDTLLRTLGARLTACLG 945
            RLLL  RL  A+ RA+R   R AVLF+DLDRFK INDSLGH  GD LL+++  RL  CL 
Sbjct: 218  RLLLADRLPQALTRAKRQQSRAAVLFVDLDRFKNINDSLGHNQGDRLLQSVARRLQECLR 277

Query: 946  DTGTLARLGGDEFVAVIEDIDGIPAVGTIALTMLERLREPCRLSEGPEVCIGGSVGISLF 1005
             + T+ R GGDEF+ ++ED+      G I   +LE L  P R  +G +  +  S+GI+L+
Sbjct: 278  QSDTIVRQGGDEFIVILEDLQLPEQAGQIGAKLLETLASPYR-EDGYDFFLTASIGIALY 336

Query: 1006 PEDGDNPDTLLQHADTALGQVKGAGGGAYGFYTRTLTERISARLGLEAGLRHALEQGDFL 1065
            P+DGD+ DTLL++ADTA+ + K +GG    FYT  + ER+ +R+ LE GLR ALE+ +  
Sbjct: 337  PDDGDDADTLLRNADTAMYEGKSSGGNTVRFYTGRMNERLQSRVSLENGLRRALERDELQ 396

Query: 1066 LHYQPLIALGTGEVEGVEALVRWAGGDGLLIPPDRFIPLAEDTGLIVPLGEWVLGEACRT 1125
            L+YQP I L +G + G EAL+RW  G G LIPPD+FIP+AE+TGLIVP+G WVL  A   
Sbjct: 397  LYYQPQIDLASGRLLGAEALLRWNDG-GRLIPPDQFIPVAEETGLIVPIGLWVLDTAIAR 455

Query: 1126 MQRWR-----SQGMPLTV--LAVNLSPRQFRDHAIPALVRRVLEQTGLPASVLELEITES 1178
               WR      QGM  T   +A+NLS RQF    I   V   LE+ GLP S +ELE+TES
Sbjct: 456  AAAWRRHWQLRQGMGATPPRIAINLSARQFWGGGIAEHVLLRLEREGLPPSTIELEVTES 515

Query: 1179 AIMEQGAAAEAQMTGLKHLGVRLAIDDFGTGYSSLANLRRFPIDKIKIDQSFV--RDIPR 1236
             ++ Q A    ++  L+  GV LA+DDFGTGYSSL+ LR  PID +KID+SF+   D  +
Sbjct: 516  VLLRQEADCLEELRRLREAGVGLALDDFGTGYSSLSYLRLLPIDTLKIDKSFIFPLDEDQ 575

Query: 1237 DAAAEEITATIIAMGRTLKLHVLAEGVETTDQLDFLSRKQCDSAQGYLFSRPITAAA 1293
            D  A  I   I+AM  TL   V+AEGVE   QL+ L    CDS QGYL SRP+   A
Sbjct: 576  DGEAAAIVRAILAMAHTLGHKVVAEGVERQTQLELLRTMGCDSFQGYLESRPLPPEA 632



 Score = 41.6 bits (96), Expect = 2e-07
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 617 RKQMVLRESEARFRATFEQAAVGIAHLDPDGHWLRVNHKLCDIVGYPPDELL-TLSFQDI 675
           R+ ++LR +   +    E A  G+   +P    L    +L  I+GY  + L+ T ++  +
Sbjct: 70  REIVILRRAARAYELAMEGAHDGMWTWNPLSKELTAGQRLHAILGYGENFLMDTHAWLTL 129

Query: 676 THPDDLRADLRQMEALLAGQIDTYTIEKRYIRKTGESLWINLTVSLVRDIHNAPAYFISV 735
            HP+D     R +   L G    +  E R   K+GE  WI      VRD           
Sbjct: 130 VHPEDTARYNRAVSEHLKGLTPHFYCEYRVRAKSGEYRWIASRGIAVRDARGVATLMAGS 189

Query: 736 VENIQSRK 743
           V +I  RK
Sbjct: 190 VTDITERK 197