Pairwise Alignments

Query, 1301 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation (NCBI) from Rhodospirillum rubrum S1H

Subject, 878 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  485 bits (1248), Expect = e-141
 Identities = 260/594 (43%), Positives = 365/594 (61%), Gaps = 4/594 (0%)

Query: 708  KTGESLWINLTVSLVRDIHNAPAYFISVVENIQSRKEAELQLLLASAVFSNSMEGIFVTD 767
            K  + LW+            A A  I +  NI   KE E QL LA+ VF +++EG+ +TD
Sbjct: 285  KQNKHLWLETLKIPAMTSEGALAGVIGMTRNISKHKEVEEQLTLATNVFKHTLEGVVITD 344

Query: 768  LKGSILAVNPAFSQITLYEAAEVLGRNARILQSGRQNREFYVALWQDVLTIGSWRGEIWN 827
              G+I  VN AF +IT Y   E+LG+N R+  SGR  + F+ A+W  +L  G W GEIWN
Sbjct: 345  RHGNITDVNGAFYEITGYSREELLGQNPRLFNSGRHEKAFFDAMWNHLLETGKWNGEIWN 404

Query: 828  RRRDGEVFPEWLSISSVRNHQGEVTNYIGIFSDLSRIKHSEAKFHHLAHHDPLTGLPNRL 887
            RR+DG +FP+ ++IS++ +  G+V  ++ +FSD+S  K SEA+  HLA+ DPLT LPNR+
Sbjct: 405  RRKDGTIFPQNITISTIYDELGDVRYFVAVFSDISAQKQSEAQLAHLAYFDPLTHLPNRM 464

Query: 888  LLRSRLDHAIERARRTGGRCAVLFLDLDRFKMINDSLGHRAGDTLLRTLGARLTACLGDT 947
             L  +L   +  A+R   + A +F+D+D FK INDS GH  GD +L  L  RL + L + 
Sbjct: 465  KLMMQLKQELRHAKRLNAQLATVFIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQLQEQ 524

Query: 948  GTLARLGGDEFVAVIEDIDGIPAVGTIALTMLERLREPCRLSEGPEVCIGGSVGISLFPE 1007
              L+R+GGDEFVA+I  I            + +   +P  +S G  + +  S+G+S++P+
Sbjct: 525  DVLSRIGGDEFVALISGIQSHEDAAAAINQLRQVFEQPFVVSTGDHLRLTASMGVSIYPD 584

Query: 1008 DGDNPDTLLQHADTALGQVKGAGGGAYGFYTRTLTERISARLGLEAGLRHALEQGDFLLH 1067
            DG N DTLL++AD A+ + K  G   + FYT +LT++    L L++ L  ALEQ    L 
Sbjct: 585  DGSNADTLLRNADAAMYRAKSEGRNNFAFYTESLTKQSFEHLKLQSALYGALEQNALYLM 644

Query: 1068 YQPLIALGTGEVEGVEALVRWAGGDGLL--IPPDRFIPLAEDTGLIVPLGEWVLGEACRT 1125
            YQP + L + +  GVEAL+RW   D +L  I P  FIP+AE  GLI  +G WVL  AC  
Sbjct: 645  YQPKLDLVSRKTIGVEALLRW--NDPILGQISPGVFIPVAEKIGLIYDIGLWVLETACLQ 702

Query: 1126 MQRWRSQGMPLTVLAVNLSPRQFRDHAIPALVRRVLEQTGLPASVLELEITESAIMEQGA 1185
              RW ++G P   +AVN++ +Q +  +    V+R+L QTGLPA+ LELE+TES +M    
Sbjct: 703  GVRWLTEGKPFGRIAVNVAGQQLQRSSFVEDVKRILTQTGLPATCLELEVTESVMMHNPD 762

Query: 1186 AAEAQMTGLKHLGVRLAIDDFGTGYSSLANLRRFPIDKIKIDQSFVRDIPRDAAAEEITA 1245
             A   +  L  LG+ L++DDFGTGYSSL  L++ PI K+KIDQSFVRDIP D     I  
Sbjct: 763  VAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKLPIHKLKIDQSFVRDIPFDTNNTAIAK 822

Query: 1246 TIIAMGRTLKLHVLAEGVETTDQLDFLSRKQCDSAQGYLFSRPITAAALEKWLA 1299
             +IA+G  LKL ++AEGVET  Q +FL++  CD AQGYLFSRP+  A +E +LA
Sbjct: 823  AVIALGHALKLEIVAEGVETQAQAEFLTQNLCDQAQGYLFSRPLLPADVEAFLA 876



 Score = 36.2 bits (82), Expect = 1e-05
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 9/140 (6%)

Query: 612 IADHRRKQMVLRESEARFRATFEQAAVGIAHLDPDGHWLRVNHKLCDIVGYPPDELLTLS 671
           I+ H+  +  L  +   F+ T E    G+   D  G+   VN    +I GY  +ELL   
Sbjct: 316 ISKHKEVEEQLTLATNVFKHTLE----GVVITDRHGNITDVNGAFYEITGYSREELLG-- 369

Query: 672 FQDITHPDDLRADLRQMEALLAGQIDT--YTIEKRYIRKTGESLWINLTVSLVRDIHNAP 729
            Q+    +  R +    +A+    ++T  +  E    RK G     N+T+S + D     
Sbjct: 370 -QNPRLFNSGRHEKAFFDAMWNHLLETGKWNGEIWNRRKDGTIFPQNITISTIYDELGDV 428

Query: 730 AYFISVVENIQSRKEAELQL 749
            YF++V  +I ++K++E QL
Sbjct: 429 RYFVAVFSDISAQKQSEAQL 448