Pairwise Alignments

Query, 822 a.a., TonB-dependent siderophore receptor (NCBI) from Rhodospirillum rubrum S1H

Subject, 817 a.a., ligand-gated channel protein from Herbaspirillum seropedicae SmR1

 Score =  357 bits (916), Expect = e-102
 Identities = 262/838 (31%), Positives = 406/838 (48%), Gaps = 68/838 (8%)

Query: 22  PLASLLASTILGWSLASPASEVWAQQPQAIDQHAIRFQIPAQPLASAIDAFIDQSGWQIS 81
           PL+   A +   W LA       A   QA+ Q   RF IP  PL   +  F   +   ++
Sbjct: 11  PLSRPRALSPRWWPLAPALMVTAALHAQAVQQ---RFDIPPGPLEQVLARFAQAADVPLA 67

Query: 82  YSTAVARDKTSSAVAGEMTPAEALRRLVSGTGLAVRLTGAD-----AAALFDPLPQGDDQ 136
             +   + + S  +AG  +       L++G+G  +  T +      A+    P       
Sbjct: 68  LQSGKLQGQHSPGLAGSYSVQAGFDALLAGSGYRIGKTASGYVLVPASEAATPSAATTPA 127

Query: 137 KTGALTLDTLTVEGAGIDPGVGLGGGVVTRGYVAEAARIGTKTDTDLKKVPQSIAVVSRQ 196
            +G+L    ++   A  DPG         + + A  +   TKT T L +VPQSI+VV+ +
Sbjct: 128 ASGSLPAIQIS---ASADPG--------EQRWTARDSASTTKTATPLIEVPQSISVVTAE 176

Query: 197 ELEDRDAQSLVEAVGYSSGVRTGVYGFDPRFDTIHVRGFNVSSEGFYRDGLR-DLGGSFS 255
            +    A +  +A+GY+ GV    YG D R+D I++RGF+  S GFY DGL      SF+
Sbjct: 177 RIAAMGATTARDALGYTPGVNISPYGSDSRYDWINLRGFDAYSPGFYLDGLPLRNANSFA 236

Query: 256 VFRKEPYGFEAVSVLKGPSSTLYGGGSPGGIIDVVSKRPTEQAFNEIEIQAGTRDHRQIN 315
           V+R E YG E ++VL+GP+S LYG   PGG+++VVSK P+  A  E+++Q G+   RQ+ 
Sbjct: 237 VWRTENYGIEQLAVLRGPASVLYGQAGPGGVVNVVSKLPSADAPRELQVQLGSDRRRQVG 296

Query: 316 LDTSGPVLENDTVLYRLTGLYREADTQYLAAPNDRFYVAPAVTLRSDDRDTHLTL----- 370
            D  G +  +  +LYR+ G+ R+A+       NDR Y+AP++  +     T LTL     
Sbjct: 297 ADIGGAIDADGRLLYRVIGVVRDAELPAGGMKNDRLYLAPSLVWKI-SAATSLTLQAALL 355

Query: 371 -----LTEYTDLTTGGAAGYYTSPDLKTRIETGDPAWGDFDQMQWRVGYEFEHRFNDVLA 425
                +   T    G          + + + TG+P +  F Q Q   GY   HRF++  A
Sbjct: 356 RDQGGVYTRTRPLVGSLVPTAIGTTIPSELYTGNPHFDHFSQDQELFGYRLAHRFDERFA 415

Query: 426 LRQNMRYSNIKADM------RWTGINDISDDG----ATATRSTGRIRDEAWTIGVDTHAQ 475
             Q+ R  ++  D       R+  +N  + +        TR+    R+ A    +D   Q
Sbjct: 416 FTQSARVGHMSTDYRAVQTPRFATLNAANPNDPVNFQNLTRNLFGSRESATMFSIDNQLQ 475

Query: 476 ADFATGPLSHTVLGGVDVSYIDSD-YKYGAGTAPDLNLITGNYGQQAIEGPATLDLIRNT 534
           ADF+TG + HTVL GVD      D   +  G+AP LN+   +Y       PA      N 
Sbjct: 476 ADFSTGAVRHTVLAGVDYQRSRFDAVSFSGGSAPLLNIAAPSYPNGPFVVPAPYS--DNR 533

Query: 535 VRQRQTGLYLQDQIEIDR-VVLTFGGRYDWLRSQAKNRLDLSSSTEHYDDNFSYRVGLTY 593
               QTG+YLQDQI+ +    +T GGR+D   S   NRLD  S T   D  F+ R  + Y
Sbjct: 534 AVLTQTGIYLQDQIKWNNGWEVTLGGRHDSASSTVDNRLD-GSRTSSTDRKFTRRAAVLY 592

Query: 594 LFDNGISPYVSYATSFAPT-TGTSASGAAFEPTTGEQVEVGVKYIPDSLPLSINAALFKI 652
              NG++PY+SY  SF PT T    +  +F P TG+Q EVG++Y P       +AALF +
Sbjct: 593 HAANGLAPYLSYTESFNPTATVNPLTNQSFGPETGKQTEVGLRYQPPGTNDLYSAALFDL 652

Query: 653 RQENVLASDPDNVYFQIQRGEVESTGFEIQATTRPIDGLDLTASYTYLDMEIAAGDN--- 709
           +++N ++ D +  +   Q+GE+   G E++A T+P+  L LTA+Y+Y    +    +   
Sbjct: 653 KRQNYISYDAN--FMPTQKGEIAVRGLELEAVTQPMAALRLTAAYSYTPRAVVTASSRPA 710

Query: 710 -AGKIPSGIPHHQITAWANYVFQSGLAKGLTLGAGSRFYGESWGNDTNT-VKNDARVLVD 767
             GK  + +  HQ + W ++     L  G+ LG G+R+   + GN   T VK     L+D
Sbjct: 711 EIGKQAAAVLLHQFSVWGDH----RLGNGVRLGLGARYVSATSGNGGGTPVKVPGYTLLD 766

Query: 768 AAIGYDFSALSPQLRGVSAQINGKNLFDNRAVT---FASNLSYREEGREVVGSLRYRF 822
             +GYDF+         S  +N +NL D R +T     +++ Y  + R V+ +  YR+
Sbjct: 767 GLLGYDFARW-------SLALNLRNLTDKRYLTNCDTTASMCYYGDQRSVLATASYRW 817