Pairwise Alignments

Query, 860 a.a., ATP-dependent helicase HrpB (NCBI) from Rhodospirillum rubrum S1H

Subject, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 112/451 (24%), Positives = 177/451 (39%), Gaps = 74/451 (16%)

Query: 31  LPALLEALASHGRAVLIAPPGAGKTTRVPPALLGALWLGG---QKVVMLEPRRLATRAAA 87
           LPA+L+     G+       G+GKT      +L  L +     Q +V+   R LA + A 
Sbjct: 35  LPAILKGQDVIGQG----KTGSGKTAAFGLGVLSNLNVKRFRVQALVLCPTRELADQVAT 90

Query: 88  RRMAFEAGEAVGQRFGFRVRGESRSGPL-------TRVEVMTEG-ILTRRIQDDPELAGV 139
                  G A+       + G    GP          + V T G IL    +D  +L+ +
Sbjct: 91  DIRTL--GRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILDHLSKDRIDLSEL 148

Query: 140 GCVILDEFH---ERGLQGDLAFALLREIQGALRPDLRLLVMSATLDGAAIAALMDDAPVI 196
             ++LDE     E G Q       L  I  A   + + L+ SAT      A++   A  +
Sbjct: 149 NTLVLDEADRMLEMGFQ-----EALEAIIAAAPAERQTLLFSATYP----ASIEQIAQSV 199

Query: 197 ESHGRAFPVTITHG-----------ERPAARDLGPAMARTILRALEDEPGSVLAFLPGER 245
             +     V  TH            E  AARD       T+L  L  +P S + F   +R
Sbjct: 200 TRNALMIKVEATHDTSSIRQYFYKVEGSAARD---EALETLL--LHHQPTSSVVFCNTKR 254

Query: 246 EIAAVAGALARALPADTVLRPLYGALPPAEQDAAISPCPPGQRKVVLATDIAETSLTIEG 305
           E+  VA AL ++    +V+  L+G +   E+D A+         +++ATD+A   L ++ 
Sbjct: 255 EVQNVADALHQS--GFSVIE-LHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDN 311

Query: 306 VRIVVDSGLRRSPRFDPQTGLSRLDTVRISQAGAEQRRGRAGRLEPGVCLRLWPEAEHRA 365
           +  V +  L R    DP+  + R+            R GRAG    G+    +  +++ +
Sbjct: 312 LDAVFNYDLSR----DPEVHVHRIG-----------RTGRAG--SKGLAFSFF--SDNES 352

Query: 366 LPAQETPEILAADLAPLALELARWGARDAAALCWPTPPPPGPLAQAR--DLLTSLGALEP 423
               +  E +   + P  L     GAR  AA         G   + R  D+   LGAL  
Sbjct: 353 YRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDI---LGALTS 409

Query: 424 AGGLSA-HGAAMAALPLHPRLA-HMVLAAKA 452
            G L+A H   +   P+   +A H  +A KA
Sbjct: 410 DGELTAEHIGKINLFPMRAYVAVHKKIATKA 440