Pairwise Alignments

Query, 860 a.a., ATP-dependent helicase HrpB (NCBI) from Rhodospirillum rubrum S1H

Subject, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

 Score =  247 bits (630), Expect = 4e-69
 Identities = 164/471 (34%), Positives = 246/471 (52%), Gaps = 25/471 (5%)

Query: 1   MDPSRLLRTERERKAVMPPFS-PGPLPIDPVLPALLEALASHGRAVLIAPPGAGKTTRVP 59
           +D ++ +    +RK  MP    P  LP+      + +A+A H   ++    G+GKTT++P
Sbjct: 62  LDIAQSMMVVEQRKQQMPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLP 121

Query: 60  PALLGALWLGGQKVVML---EPRRLATRAAARRMAFEAGEAVGQRFGFRVRGESRSGPLT 116
                   LG  K  ++   +PRRLA R+ A R+A E    +G   G++VR   +    T
Sbjct: 122 KICAE---LGRGKYGLIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQT 178

Query: 117 RVEVMTEGILTRRIQDDPELAGVGCVILDEFHERGLQGDLAFALLREIQGALRPDLRLLV 176
           ++++MT+GIL   IQ+D  L     +I+DE HER L  D     L+++    RPDL++++
Sbjct: 179 QIKLMTDGILLAEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPR-RPDLKVII 237

Query: 177 MSATLDGAAIAALMDDAPVIESHGRAFPVTITHGERPAARDLGPAMARTILRAL------ 230
            SAT+D    +    +AP+IE  GR +PV + +  RP A D      R  L  +      
Sbjct: 238 TSATIDPERFSKHFSNAPIIEVSGRTYPVEVRY--RPLAGDDDSESDRDQLEGIFQAVDE 295

Query: 231 --EDEPGSVLAFLPGEREIAAVAGALARALPADTVLRPLYGALPPAEQDAAISPCPPGQR 288
             ++  G +L F+ GEREI   A AL++    DT + PLY  L   EQ+    P     R
Sbjct: 296 LCDEGLGDILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQP--HAGR 353

Query: 289 KVVLATDIAETSLTIEGVRIVVDSGLRRSPRFDPQTGLSRLDTVRISQAGAEQRRGRAGR 348
           ++VLAT++AETSLT+ G++ V+D G  R  R+  +T + RL    ISQA A QR+GR GR
Sbjct: 354 RIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGR 413

Query: 349 LEPGVCLRLWPEAEHRALPAQETPEILAADLAPLALELARWGARDAAALCWPTPPPPGPL 408
            E G+C+RL+ E +  + P    PEIL  +LA + L++   G  D  A  +   P    +
Sbjct: 414 TEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNI 473

Query: 409 AQARDLLTSLGAL-----EPAGGLSAHGAAMAALPLHPRLAHMVLAAKADG 454
                LL  LGA+     +P   L+  G  +A LP+ PRLA MVL A   G
Sbjct: 474 QDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLG 524