Pairwise Alignments
Query, 1560 a.a., Multi-sensor Hybrid Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H
Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4
Score = 413 bits (1062), Expect = e-119
Identities = 304/814 (37%), Positives = 434/814 (53%), Gaps = 51/814 (6%)
Query: 602 VSELVEGRQKLDAALRENEALLRTIDEQLLCSITDRNGNIISINDNFCKLMGYTKDELLG 661
+ E E R++ A LR +LL +I E ++ D+ G + N + +++GYT+ E++G
Sbjct: 446 LKETTERREREYALLR---SLLDSIPEAII--FKDKEGKYLGCNKSAERMLGYTESEMIG 500
Query: 662 LDHRIMNSGLHDKTFWADVWATISAGGSWRGEVCNKAKDGALYWLDSVLTPFFGEDGSID 721
D + M S A+ +S R + + G LD++ PF+ G +
Sbjct: 501 QDSQTMTSNEQSMRIRAEDERVLSERTPLRYQEKVELA-GKPVLLDTLKLPFYNRRGELL 559
Query: 722 RYVALRIDITDRKKAEAERNRSNTLLRSVLASAREFSIIATDPDGVITIFNSGAEKLLGY 781
+A+ D+T R+ AE+ R + + A E + D I N +LGY
Sbjct: 560 GLIAVWRDVT-REYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGY 618
Query: 782 SAEEMVGKQTPALIHLADQVAERGRSLSDEFGVPIEGFRVFVHRSE--RDGVEAQEWTY- 838
+ E PAL+ D++ P + RV +R + D + A + +
Sbjct: 619 KSNEF-----PALVSTIDELVH-----------PDDRIRVQEYREQYLADPIGAYDVEFR 662
Query: 839 VRKDGGHLEVLLVVTAIRE--DDGRIAGYLGVAQDVSRRKEFERALVLAKQAAEEASVVK 896
+R G +L + E D + +G +D++R K E AL+ AKQ AE A++ K
Sbjct: 663 MRGKSGMYHWVLSRGRVVEFTSDNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANLYK 722
Query: 897 GQFLANMSHEIRTPMNAILGMLTLVQRTALTPHQADYVCKAHSAAGSLLGLLNDILDFSK 956
+FLANMSHEIRTPMNAI+GML L RT LTP QADY+ KA +A SLL ++NDILDFSK
Sbjct: 723 SEFLANMSHEIRTPMNAIIGMLQLASRTQLTPQQADYLDKAGFSAQSLLRIINDILDFSK 782
Query: 957 IEAGKLHLEPHPFRLETVLRDLAVVLSGSYGDKGVEVLFDIAPHLPDSFI-GDDLRLRQV 1015
IEAGKL LE F L+ VL + + +KGVE+L AP + GD LRL QV
Sbjct: 783 IEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLL-YAPVTAGLILEGDPLRLGQV 841
Query: 1016 LLNLAGNALKFTDQGQVIVSVGVLAREDDRLTMRMAVSDTGIGIAADQLASIFGAFEQAE 1075
L+N+ NA+KFT G++ + + D R+T++ V DTGIGI+ +Q S+F AF QA+
Sbjct: 842 LINMLSNAVKFTQSGEIELGCEDVGERDHRITLKFWVRDTGIGISKEQQESLFDAFAQAD 901
Query: 1076 TSTTRRFGGSGLGLTITRHLVERMGGVLRVESQPGRGSRFWFDITLPVSGEGSES----A 1131
STTR++GG+GLGL+I++HLV MGG ++V+S+ G GS F F I+ ++ E
Sbjct: 902 GSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSELGVGSTFSFTISFEIAEEAEVKPLIVP 961
Query: 1132 ESGRPLRVLVVEDNPVAGGILAQTVQGLGYDCDLVQESAETKARIVAADAAGRPYDAVLL 1191
E L+ LVV+DNP A I + ++ +D D AE ++ RP D +LL
Sbjct: 962 EVIGNLKTLVVDDNPTALQIYSTAMRDFHFDVDTASNGAEALYKL-----EHRPVDLLLL 1016
Query: 1192 DWRMPEVDGLTTARILREM---GVTLCPQSIIMVTAYGRDVLSLAEQTGDAPFDAVLTKP 1248
DW MPE+DG+ + L M G IIM+TAY + L E D A+L KP
Sbjct: 1017 DWMMPEMDGVEVIKALDAMVADGRLEKRPVIIMMTAYASE--PLKEDLDDLDIYAMLQKP 1074
Query: 1249 VTPGQLRDALLRR--DRATSEGEATALAPRGLPTPLAGRRLLVVEDNAINRQVAAELLAG 1306
L D ++ D+ A AL G T ++L+VEDN IN+QVA ELL
Sbjct: 1075 FKASALFDEIIAAFIDK-PKINPAAALPVEGNATGTG--QILLVEDNFINQQVATELLKS 1131
Query: 1307 AGAEIDLAEGGERGVMMVLRGEIAYDAVLMDIQMPDIDGFEATRRIRADARFKALPIVAM 1366
AG E+D+AE G+ + MV + YDAVLMDIQMP +DG AT+ +R + LP++AM
Sbjct: 1132 AGYEVDVAENGQVALDMVDAKQ--YDAVLMDIQMPVMDGLTATKELRKRYTKEELPVIAM 1189
Query: 1367 TANASRADREACLAAGMTEHVGKPIDITATIDVL 1400
TA+A DRE LAAGM H+ KPI + D L
Sbjct: 1190 TAHAMSGDREKSLAAGMNAHITKPIVLNELFDTL 1223
Score = 45.8 bits (107), Expect = 3e-08
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 21/169 (12%)
Query: 720 IDRYVALRIDITDRKKAEAERN-RSNTLLRSVLASAREFSIIATDPDGVITIFNSGAEKL 778
+D VA R T+R K ER R LLRS+L S E +II D +G N AE++
Sbjct: 435 LDNLVARR---TERLKETTERREREYALLRSLLDSIPE-AIIFKDKEGKYLGCNKSAERM 490
Query: 779 LGYSAEEMVGKQTPALIHLADQVAERGRSLSDEFGVPIEGFRVFVHRSERDGVEAQEWTY 838
LGY+ EM+G+ + + S + E RV SER + QE
Sbjct: 491 LGYTESEMIGQDSQTM-----------TSNEQSMRIRAEDERVL---SERTPLRYQEKVE 536
Query: 839 VRKDGGHLEVLLVVTAIREDDGRIAGYLGVAQDVSRRKEFERALVLAKQ 887
+ L+ L + R G + G + V +DV+R E L L+++
Sbjct: 537 LAGKPVLLDTLKLPFYNRR--GELLGLIAVWRDVTREYESAEQLRLSEE 583
Score = 43.1 bits (100), Expect = 2e-07
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 36/194 (18%)
Query: 336 QARRREIAQAQARLSTIVENSGDAIIGEALDGTIVGWNRAAEALFGYKAPEVIGKALAPL 395
+ R RE A ++ L +I E AII + +G +G N++AE + GY E+IG+
Sbjct: 451 ERREREYALLRSLLDSIPE----AIIFKDKEGKYLGCNKSAERMLGYTESEMIGQ----- 501
Query: 396 LIPADRMAENQSIVLSALSGEAVMAFDT-----QRIHADGHLFDVSMTACPVHDRLGHVV 450
+ M N+ + E V++ T +++ G + P ++R G ++
Sbjct: 502 --DSQTMTSNEQSMRIRAEDERVLSERTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELL 559
Query: 451 GVANLIRDI-RKRKAAEQSLLEFNAQLEKQVASRTAELEKARRALQTVLDSVPSMIGYWD 509
G+ + RD+ R+ ++AEQ L + +D+V + W
Sbjct: 560 GLIAVWRDVTREYESAEQ-------------------LRLSEERYHLAMDAVEDGLWDWY 600
Query: 510 RDLHCHIANRAYCS 523
D I N AY S
Sbjct: 601 LDSEQIICNPAYYS 614
Score = 37.4 bits (85), Expect = 1e-05
Identities = 66/288 (22%), Positives = 111/288 (38%), Gaps = 29/288 (10%)
Query: 469 LLEFNAQLEKQVASRTAEL-------EKARRALQTVLDSVPSMIGYWDRDLHCHIANRAY 521
L E N +L+ VA RT L E+ L+++LDS+P I + D++ N++
Sbjct: 428 LAEQNRRLDNLVARRTERLKETTERREREYALLRSLLDSIPEAIIFKDKEGKYLGCNKSA 487
Query: 522 CSWFNVDPSGLIGKSMRSLLGEALFTANRPFIEAVLRGQ-PQTFERMIPRPNGQGVRHSL 580
S +IG+ +++ R E VL + P ++ + + +L
Sbjct: 488 ERMLGYTESEMIGQDSQTMTSNEQSMRIRAEDERVLSERTPLRYQEKVELAGKPVLLDTL 547
Query: 581 AHYIPDVVDGEVLGFYALVHDVSELVEGRQKLDAALRENEALLRTIDEQLLCSITDRNGN 640
+ GE+LG A+ DV+ E ++L + + +++ L D
Sbjct: 548 KLPFYN-RRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLD--SE 604
Query: 641 IISINDNFCKLMGY----------TKDELLGLDHRIMNSGLHDKTFWADVWATISAGGSW 690
I N + ++GY T DEL+ D RI ++ + AD G++
Sbjct: 605 QIICNPAYYSMLGYKSNEFPALVSTIDELVHPDDRIRVQEYREQ-YLAD------PIGAY 657
Query: 691 RGEVCNKAKDGALYW-LDSVLTPFFGEDGSIDRYVALRIDITDRKKAE 737
E + K G +W L F D R V DIT K E
Sbjct: 658 DVEFRMRGKSGMYHWVLSRGRVVEFTSDNQPKRMVGTHKDITRHKSNE 705