Pairwise Alignments

Query, 325 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  220 bits (561), Expect = 3e-62
 Identities = 118/293 (40%), Positives = 182/293 (62%), Gaps = 14/293 (4%)

Query: 45  AEFWHYFSENKGAVAGLIFIVVIVIVALFAPQVAPHHPYEMN---VPMAKMPPAWLEGGQ 101
           ++F +YF  +K A++     V+ VIVA+ AP +AP +PY+++   +  A++PP+W+EGG 
Sbjct: 17  SDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGN 76

Query: 102 WSYLLGTDALGRDILSRIIFGARLSLMVGAVVVTLSLVAGVGLGLLAGFLRGWVDIVIMR 161
             +LLGTD  GRDI S I++G+RLSL +G + V L L  G+ +GL AG+  G +D  +MR
Sbjct: 77  EHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMR 136

Query: 162 LMDIILSVPSLLLAIAIVAI----LGPGLENAMAAIAVVVL------PHYTRLTRAAVMT 211
             DI LS  ++++AI + AI     G    +  A + +VV+      P Y R  RA+V+ 
Sbjct: 137 FADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLA 196

Query: 212 EATKDYVTASRVAGASKGRLMVKTILPNTLAPLIVQATLGFSTAILDAAALGFLGLGARP 271
           E  K+YV A+RV G    R+M + ILPN L+P++V +T+  + AI+  AAL FLGLG   
Sbjct: 197 EKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPV 256

Query: 272 PRPEWGTMLSEAREFVLS-HWWIVTFPGLAILFTVLAFNLMGDGLRDALDPRM 323
            +P  G+++S    ++ S  WWI  FPG+ ++  VL  NL+GD LRD  +P++
Sbjct: 257 DQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPKI 309