Pairwise Alignments

Query, 182 a.a., PBS lyase HEAT-like repeat (NCBI) from Rhodospirillum rubrum S1H

Subject, 641 a.a., PBS lyase HEAT domain protein repeat-containing protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 72.8 bits (177), Expect = 1e-17
 Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 5/135 (3%)

Query: 49  ALIKLQTPAVARRLARFLRSDDAQLRNAAIEALQEMPAAIAPHLQELLTDDDSDIRIFAV 108
           AL K+   A    +   LRSDDA +RN A++ L+E+ A     L++LL DDD D+RIFA 
Sbjct: 55  ALRKIGGVAAVHGVLPLLRSDDAPIRNIAMDVLREIGADDFDSLKQLLHDDDPDMRIFAS 114

Query: 109 TILGTLRLTCAPDWLVEVIRRESHINVCSAAVDALAEIGGPEAIEDL-EALLDRFPGDSF 167
            ILGT     A   L E + R+  +NV   A  +L  +  PEA + L +A++D    + +
Sbjct: 115 DILGTSESILAVPSLCEALLRDPEVNVRYQAAVSLGTLAFPEAADCLNKAMMD----EEW 170

Query: 168 MKFAIETTIRRIRGQ 182
           ++F++   + +IR +
Sbjct: 171 VQFSVIEALTKIRAE 185



 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 22  DHPEAAMALCERLEVETAPSVRAMIFTALIKLQTPAVARRLARF---LRSDDAQLRNAAI 78
           D  E    L E LE E  P VR +   A+  +  P  + RL      L  ++ ++R A I
Sbjct: 477 DVEENLAELTEALEDEV-PDVRKVALEAVANV-CPFSSSRLELVVPRLHDENREVRLALI 534

Query: 79  EALQEMPAA-IAPHLQELLTDDDSDIRIFAVTILGTLRLTCAPDWLVEVIRRESHINVCS 137
           E L       + P+L + L D D  +R+ A+  LGTL+   A   LV +     H+ V  
Sbjct: 535 ELLGNCGEGNVFPYLIQALDDPDDWVRVRAIEALGTLKDAEAVPQLVALTESAGHL-VLL 593

Query: 138 AAVDALAEIGGPEAIEDLEALLDRFPGDSFMKFAIETTIRRI 179
             V+AL  IGG  A   L  L++    D  ++ A ET   RI
Sbjct: 594 KVVEALGAIGGNVAFRALLHLME--SDDPEVQQAAETAAARI 633