Pairwise Alignments

Query, 533 a.a., CheW protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 161 a.a., chemotaxis protein CheW from Pseudomonas fluorescens FW300-N2E3

 Score = 95.9 bits (237), Expect = 9e-25
 Identities = 55/155 (35%), Positives = 96/155 (61%), Gaps = 4/155 (2%)

Query: 378 GTTDDEEQFVAFRLMNEEYGVPIDSVQEIVRVPEELTRVPKTPDFIEGVVNLRGVVLPVV 437
           G+ D   Q+V F+L NE YG+ +  VQE++R  E +  VP  P ++ G++NLRG V+ V+
Sbjct: 10  GSEDPILQWVTFKLDNETYGINVMRVQEVLRYTE-IAPVPGAPSYVLGIINLRGNVVTVI 68

Query: 438 DQRRRFGLPGMERNDRQRIMVYTIRGVRTGFIVDSVSEVIRIPASLIGPAP-VLSDEQQR 496
           D R+RFGL  +E +D  RI++        G +VDSV+EV+ +  S I  AP V ++E  +
Sbjct: 69  DTRQRFGLGTVEVSDNTRIVIIEADKQVVGIMVDSVAEVVYLRQSEIETAPNVGNEESAK 128

Query: 497 LIRRVANIEKQKRMILLLDVEQLLDGKELAVVGSV 531
            I+ V N  K   +++L+++++++  +E + + S+
Sbjct: 129 FIQGVCN--KNNELLILVELDKMMSEEEWSELESI 161



 Score = 80.1 bits (196), Expect = 5e-20
 Identities = 42/131 (32%), Positives = 76/131 (58%), Gaps = 1/131 (0%)

Query: 34  QFVIFHVDNDLFAVPLSEVQEIIRMPDVVCVPLSPAALEGLANLRGSVLPVIRLRHVFGM 93
           Q+V F +DN+ + + +  VQE++R  ++  VP +P+ + G+ NLRG+V+ VI  R  FG+
Sbjct: 17  QWVTFKLDNETYGINVMRVQEVLRYTEIAPVPGAPSYVLGIINLRGNVVTVIDTRQRFGL 76

Query: 94  APVVHDDATRVVVLDQGRP-VGLVVDRVANVVSVEADHIEPSGAIGGTVDTDLLTGMIKG 152
             V   D TR+V+++  +  VG++VD VA VV +    IE +  +G       + G+   
Sbjct: 77  GTVEVSDNTRIVIIEADKQVVGIMVDSVAEVVYLRQSEIETAPNVGNEESAKFIQGVCNK 136

Query: 153 DGDRAMVMILD 163
           + +  +++ LD
Sbjct: 137 NNELLILVELD 147



 Score = 71.2 bits (173), Expect = 2e-17
 Identities = 43/152 (28%), Positives = 85/152 (55%), Gaps = 18/152 (11%)

Query: 206 QLVSFEVAGQEYALPIERVQEIVQIPGLITDVPNTPAHVLGVMTLRNRLLPLVGLREMFG 265
           Q V+F++  + Y + + RVQE+++    I  VP  P++VLG++ LR  ++ ++  R+ FG
Sbjct: 17  QWVTFKLDNETYGINVMRVQEVLRYTE-IAPVPGAPSYVLGIINLRGNVVTVIDTRQRFG 75

Query: 266 LPTLALTETNKIVVVSLEGGAGGSGRSVGVVMDSVKEVLRVGHALIDPMPALLARTGNLG 325
           L T+ +++  +IV++  +       + VG+++DSV EV+ +  + I+  P       N+G
Sbjct: 76  LGTVEVSDNTRIVIIEAD------KQVVGIMVDSVAEVVYLRQSEIETAP-------NVG 122

Query: 326 EIEAICRLQG----GNRLVSILSADAMFNSDE 353
             E+   +QG     N L+ ++  D M + +E
Sbjct: 123 NEESAKFIQGVCNKNNELLILVELDKMMSEEE 154