Pairwise Alignments

Query, 533 a.a., CheW protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 164 a.a., purine-binding chemotaxis protein CheW (RefSeq) from Shewanella amazonensis SB2B

 Score =  101 bits (252), Expect = 2e-26
 Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 19/178 (10%)

Query: 355 RAVAANALGEEDAVADEETPGYLGTTDDEEQFVAFRLMNEEYGVPIDSVQEIVRVPEELT 414
           R VAA A G++DAV                Q+V FRL NE YG+ +  VQE++R  E + 
Sbjct: 5   RNVAAVAAGKDDAVL---------------QWVTFRLDNETYGINVMQVQEVLRYTE-IA 48

Query: 415 RVPKTPDFIEGVVNLRGVVLPVVDQRRRFGLPGMERNDRQRIMVYTIRGVRTGFIVDSVS 474
            VP  P ++ G++NLRG V+ V+D R RFGL   E +D  RI++        G +VDSV+
Sbjct: 49  PVPGAPHYVLGIINLRGNVVTVIDTRSRFGLQPAEVDDSTRIVIIEAEKQVIGILVDSVA 108

Query: 475 EVIRIPASLIGPAP-VLSDEQQRLIRRVANIEKQKRMILLLDVEQLLDGKELAVVGSV 531
           EV+ +  S I  AP V ++E  + I+ V+N  +   +++L+D+++LL  +E A +  +
Sbjct: 109 EVVYLRRSEIDNAPNVGTEESAKFIQGVSN--RDNELLILVDLDKLLSDEEWAELAQI 164



 Score = 84.3 bits (207), Expect = 3e-21
 Identities = 46/151 (30%), Positives = 89/151 (58%), Gaps = 3/151 (1%)

Query: 22  AAAGALQAGNARQFVIFHVDNDLFAVPLSEVQEIIRMPDVVCVPLSPAALEGLANLRGSV 81
           AA  A +     Q+V F +DN+ + + + +VQE++R  ++  VP +P  + G+ NLRG+V
Sbjct: 8   AAVAAGKDDAVLQWVTFRLDNETYGINVMQVQEVLRYTEIAPVPGAPHYVLGIINLRGNV 67

Query: 82  LPVIRLRHVFGMAPVVHDDATRVVVLD-QGRPVGLVVDRVANVVSVEADHIEPSGAIGGT 140
           + VI  R  FG+ P   DD+TR+V+++ + + +G++VD VA VV +    I+ +  +G  
Sbjct: 68  VTVIDTRSRFGLQPAEVDDSTRIVIIEAEKQVIGILVDSVAEVVYLRRSEIDNAPNVGTE 127

Query: 141 VDTDLLTGMIKGDGDRAMVMILDAAKVVARE 171
                + G+   + D  +++++D  K+++ E
Sbjct: 128 ESAKFIQGV--SNRDNELLILVDLDKLLSDE 156



 Score = 66.6 bits (161), Expect = 6e-16
 Identities = 45/165 (27%), Positives = 86/165 (52%), Gaps = 20/165 (12%)

Query: 195 VQAATDGDDES--QLVSFEVAGQEYALPIERVQEIVQIPGLITDVPNTPAHVLGVMTLRN 252
           V A   G D++  Q V+F +  + Y + + +VQE+++    I  VP  P +VLG++ LR 
Sbjct: 7   VAAVAAGKDDAVLQWVTFRLDNETYGINVMQVQEVLRYTE-IAPVPGAPHYVLGIINLRG 65

Query: 253 RLLPLVGLREMFGLPTLALTETNKIVVVSLEGGAGGSGRSVGVVMDSVKEVLRVGHALID 312
            ++ ++  R  FGL    + ++ +IV++  E       + +G+++DSV EV+ +  + ID
Sbjct: 66  NVVTVIDTRSRFGLQPAEVDDSTRIVIIEAE------KQVIGILVDSVAEVVYLRRSEID 119

Query: 313 PMPALLARTGNLGEIEAICRLQG----GNRLVSILSADAMFNSDE 353
             P       N+G  E+   +QG     N L+ ++  D + + +E
Sbjct: 120 NAP-------NVGTEESAKFIQGVSNRDNELLILVDLDKLLSDEE 157