Pairwise Alignments

Query, 533 a.a., CheW protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 165 a.a., chemotaxis protein CheW from Rahnella sp. WP5

 Score = 95.5 bits (236), Expect = 1e-24
 Identities = 56/152 (36%), Positives = 91/152 (59%), Gaps = 10/152 (6%)

Query: 384 EQFVAFRLMNEEYGVPIDSVQEIVRVPEELTRVPKTPDFIEGVVNLRGVVLPVVDQRRRF 443
           ++F+ F L +EEYG+ I  VQEI R  +++TR+  TP FI+GV NLRGV++P++D R +F
Sbjct: 17  QEFLIFTLGDEEYGIDILKVQEI-RGYDQVTRIANTPAFIKGVTNLRGVIVPILDLRVKF 75

Query: 444 GLPGMERNDRQRIMVYTIRGVRTGFIVDSVSEVIRIPASLIGPAP----VLSDEQQRLIR 499
               +  N+   ++V        G +VD VS+V+ +    I PAP     +S E    + 
Sbjct: 76  AQEDVIYNENTVVIVLNFENRVVGIVVDGVSDVLSLSQDQIRPAPEFAVTMSTEYLTGLG 135

Query: 500 RVANIEKQKRMILLLDVEQLLDGKELAVVGSV 531
            + +     RM++L+D+E+LL  +E+A+V SV
Sbjct: 136 SLGD-----RMLILVDIEKLLSSEEMALVDSV 162



 Score = 87.4 bits (215), Expect = 3e-22
 Identities = 54/158 (34%), Positives = 97/158 (61%), Gaps = 5/158 (3%)

Query: 21  GAAAGALQAGNA--RQFVIFHVDNDLFAVPLSEVQEIIRMPDVVCVPLSPAALEGLANLR 78
           G A  A  AG    ++F+IF + ++ + + + +VQEI     V  +  +PA ++G+ NLR
Sbjct: 3   GLATVAKIAGETVGQEFLIFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLR 62

Query: 79  GSVLPVIRLRHVFGMAPVVHDDATRVVVLD-QGRPVGLVVDRVANVVSVEADHIEPSGAI 137
           G ++P++ LR  F    V++++ T V+VL+ + R VG+VVD V++V+S+  D I P+   
Sbjct: 63  GVIVPILDLRVKFAQEDVIYNENTVVIVLNFENRVVGIVVDGVSDVLSLSQDQIRPAPEF 122

Query: 138 GGTVDTDLLTGMIKGDGDRAMVMILDAAKVVAREFQAI 175
             T+ T+ LTG +   GDR M++++D  K+++ E  A+
Sbjct: 123 AVTMSTEYLTG-LGSLGDR-MLILVDIEKLLSSEEMAL 158



 Score = 64.3 bits (155), Expect = 3e-15
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 17/173 (9%)

Query: 187 AGRAEDGRVQAATDGDDESQLVSFEVAGQEYALPIERVQEIVQIPGLITDVPNTPAHVLG 246
           AG A   ++   T G +    + F +  +EY + I +VQEI +    +T + NTPA + G
Sbjct: 2   AGLATVAKIAGETVGQE---FLIFTLGDEEYGIDILKVQEI-RGYDQVTRIANTPAFIKG 57

Query: 247 VMTLRNRLLPLVGLREMFGLPTLALTETNKIVVVSLEGGAGGSGRSVGVVMDSVKEVLRV 306
           V  LR  ++P++ LR  F    +   E   ++V++ E       R VG+V+D V +VL +
Sbjct: 58  VTNLRGVIVPILDLRVKFAQEDVIYNENTVVIVLNFE------NRVVGIVVDGVSDVLSL 111

Query: 307 GHALIDPMP--ALLARTGNLGEIEAICRLQGGNRLVSILSADAMFNSDEIRAV 357
               I P P  A+   T  L  + ++     G+R++ ++  + + +S+E+  V
Sbjct: 112 SQDQIRPAPEFAVTMSTEYLTGLGSL-----GDRMLILVDIEKLLSSEEMALV 159