Pairwise Alignments

Query, 719 a.a., TonB-dependent receptor (NCBI) from Rhodospirillum rubrum S1H

Subject, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score = 66.2 bits (160), Expect = 5e-15
 Identities = 126/551 (22%), Positives = 208/551 (37%), Gaps = 86/551 (15%)

Query: 49  ATLAQGAADPTQRSIVLPQMVVSGEKIERPLEDTASSVAILPAEDLEDKSGAASVADAIA 108
           + LA G A          ++VV+  +IE+PL + A SVA+L  E LE K G   + DA+ 
Sbjct: 12  SVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLE-KQGKTELYDALN 70

Query: 109 DVPNVLYTGTVGAPIIRGQDTQGPNFGSTAFFGGTIPRATVNLDGHYQNYYEYVFG--TT 166
             P V  TG  G P  +    +G      A     I  A    DG+        +G  T 
Sbjct: 71  QEPGVSVTGGAGRP--QNITIRGMTGNRIAIVRDGIQSA----DGYGAADINDKYGRNTF 124

Query: 167 SIWDVESVEVFRGPQTTSQGANAIAGAIIVNTKDPT--------FEPEASYLAEIGSYSR 218
           S+ +V+ ++V +G  +T  G+ AI G +I+ +K P         +   A   + I +  +
Sbjct: 125 SLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTYSGISNRYQ 184

Query: 219 RRTALALSGPIIADQLAARMAIDY-SGRDTFVEYVNSNFDTGDADLDFRSLTARGKLLWE 277
              ALA+          A + IDY  G +T     N N D  + ++D  +L       W 
Sbjct: 185 GNHALAMR----HGDGEALLTIDYWQGEET----RNFNQDLYNREVDGYNL-GFSHHYWL 235

Query: 278 PEALPDLTAKLTYAFGSANRPTWESASRPYDELDNATLSMPSWEQRTHTGIADLSYAFAN 337
            +AL  L   L Y    A R    S+ +  D+ D  +       QR+ T +A +   +  
Sbjct: 236 NDAL-RLKTHLEYFDDYAKRREGTSSIQKDDKWDLVSFYE---YQRSQTRLASVGADYTA 291

Query: 338 DIT--------LFNQTQYSDTHVDRVTEPANNGSAVI-------DQNTVSNELRLTLGDT 382
           +++         + ++  + T  +R+     +G+ ++       D+      L  TL   
Sbjct: 292 NLSWMDTLEGKFYWRSTENITQTNRLMANDRSGAGILSYRRELRDEGFNDEALGATLNAQ 351

Query: 383 ESTLSG-----------MTGLYLARTRSKDTLHIRGLSRFDDE------KQHAGLFSEMA 425
           +    G           + G    R +S   +   G     DE      +   G++ +  
Sbjct: 352 KEWQQGEWLHQFAYGMSVDGHDYQRPKSIRRMESSGDDLQADEPFAPAREYRFGVYGQDN 411

Query: 426 YRLTDRWTLTGGLRYQRDHILRSGTS---SYARTALDYDESFDAWLPKVSLAYDVTPEVT 482
             L D WTL  GLR+    +    T     Y    +   E    W P  S++Y   PE  
Sbjct: 412 LLLGD-WTLAAGLRFDAQKLSPKNTDRIHGYKVVTMGSSE----WSPSASISYQWHPEWN 466

Query: 483 VGALVNRGYNPGGVNLSFASSKYVTFEPETVWNYEVFSRAKLLDDRLILTGNLFYSRHSD 542
                N G+     + ++ +S + +F P T +              +I   N   +  SD
Sbjct: 467 TYLSYNHGFRAPSYDKAYGASDH-SFVPLTPF--------------IIKPNNKLRAETSD 511

Query: 543 SQRLLPDYLNG 553
           S  L   Y NG
Sbjct: 512 SFELGSKYDNG 522