Pairwise Alignments

Query, 349 a.a., Periplasmic binding protein/LacI transcriptional regulator (NCBI) from Rhodospirillum rubrum S1H

Subject, 318 a.a., Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

 Score = 67.4 bits (163), Expect = 5e-16
 Identities = 76/284 (26%), Positives = 120/284 (42%), Gaps = 28/284 (9%)

Query: 8   LVLAASLVAGPALAADAPVDVSQVPKGFSAKDVGKSYSIATVVKVDGIAWFDRMREGAKQ 67
           L  A  L+A   LAA +    + +P   +     +   +A V+K     +F  M +GAK 
Sbjct: 3   LPFAGRLLAVAMLAAAS----AALPLSSAFAQTAEKPKVALVMKSLANEFFLTMEDGAKA 58

Query: 68  FGADTGHDTWMVG---PSQADAAAQVQLVENLIAQGVDAICVVPFSVEALEPVLKKARDR 124
           +  +   D  ++      + D A Q+++VE +I   VDA+ + P   +A+ PV+KKA D 
Sbjct: 59  YQKEHSADFDLISNGIKDETDTANQIRIVEQMIVSKVDALIIAPADSKAMVPVIKKAVDA 118

Query: 125 GIVVI--------AHEASNITNADFVLEAFDNLAYGAKLMEVLGTYMKGEGKYVTTVGSL 176
           GI VI        A   S   N  FV    DN   GA+L   +G Y+  + K    VG +
Sbjct: 119 GITVINIDNQLDPAVVKSKNINVPFV--GPDN-RKGARL---VGEYLAKQLKAGDEVGII 172

Query: 177 TSKSQNEWIDGAIAYQKAHFPKMEQATGRLETYDDANTDYNKLKEV----LTTYPDIKGI 232
              S       A A        ME A  ++ +    + + NK  +V    L+ YP+IK +
Sbjct: 173 EGVSTT---TNAQARTAGFKDAMEAAQVKVVSLQSGDWEINKGNQVAASMLSEYPNIKAL 229

Query: 233 LGGPMPTSAGAGRLISERGLKDKLFFAGTGLVSVAGEYLSKGDI 276
           L G    + GA   +   G   K+   G   ++     L  G +
Sbjct: 230 LAGNDSMAVGAVSAVRAAGKAGKVQVVGYDNINAIKPMLKDGRV 273