Pairwise Alignments

Query, 349 a.a., Periplasmic binding protein/LacI transcriptional regulator (NCBI) from Rhodospirillum rubrum S1H

Subject, 317 a.a., Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

 Score = 50.8 bits (120), Expect = 5e-11
 Identities = 61/254 (24%), Positives = 99/254 (38%), Gaps = 7/254 (2%)

Query: 55  IAWFDRMREGAKQFGADTGHDTWMVGPSQADAAAQVQLVENLIAQGVDAICVVPFSVEAL 114
           I +F  M E A Q  A   +   +V  +Q+ +  Q   VEN + QGVDA+ V P  V AL
Sbjct: 41  IPYFIYMHEQASQ-EAKVLNVELLVQDAQSSSTKQSSDVENALTQGVDAMVVAPNDVTAL 99

Query: 115 EPVLKKARDRGI-VVIAHEASNITNADFVLEAFDNLAYGAKLMEVLGTYMKGEGKYV--- 170
            P L +     + +V        T+        D++A G  + E++ + MK   +     
Sbjct: 100 APALNEVLSEKVPLVTVDRRVEGTDTPVPYVTADSVAGGRLMAELVTSNMKNGARVAFIG 159

Query: 171 TTVGSLTSKSQNEWIDGAIAYQKAHFPKMEQATGRLETYDDANTDYNKLKEVLTTYPDIK 230
            T GS T+  + + +   +      F  + + +G  E     +   N L  +    PD  
Sbjct: 160 GTPGSSTAIDRAKGVHEGLKAGGGKFQLVAEQSGEWERAKAMSVAENILTSLSANPPDAI 219

Query: 231 GILGGPMPTSAGAGRLISERGLKDKLFFAGTGLVSVAGEYLSKGDIQYIQFWDPAVAAYA 290
               G M  + GA   +   GLK K+   G          +  GDI  I    P+     
Sbjct: 220 ICASGDM--ALGAAEAVRATGLKGKVKVIGFDAYPEVLRAIRDGDIAGIVEQSPSKQIRT 277

Query: 291 MNIVAVMALDGKAD 304
              +AV  + G+ +
Sbjct: 278 ALRMAVKKVRGEGE 291