Pairwise Alignments

Query, 232 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

Subject, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  186 bits (472), Expect = 4e-52
 Identities = 97/239 (40%), Positives = 156/239 (65%), Gaps = 18/239 (7%)

Query: 1   MDFQGYGDLLITGAAMTIKLVLGAVSFGLVLGLIGTTLKLSRNALARAVGNAYTDLFRGL 60
           +D QGY   ++ GA +TI++ + ++   ++LG++G   K++    ARA+   YT + RG+
Sbjct: 2   LDLQGYEASILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGI 61

Query: 61  PELLVVLIMYYGAEALV------------RWLVND------VLALDVAVSISPYVGGVLS 102
           P+L++++++++G + L+            +WL         V  L   V ISP+V GVL+
Sbjct: 62  PDLVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLT 121

Query: 103 LGLIFGAYASEVFRGAILAIPRGHVEAARAFGMGPVLTYRRIILPQVWRVALPGLGNLFL 162
           +G IFGAY +E FRGAILA+ +G +EAA+A+GM   +++RRI+LPQ+ R A+PG GN +L
Sbjct: 122 IGFIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWL 181

Query: 163 VSLKDTALVSAIGLNELMRSANIAGRSTRDYFTFLLAAAFLYLAMTMVSMAVIALLERR 221
           V LK TALVS IGL +++R +++A  ST+  FTF +A A ++L  T VS  ++ LLER+
Sbjct: 182 VLLKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERK 240