Pairwise Alignments

Query, 639 a.a., Excinuclease ABC, C subunit (NCBI) from Rhodospirillum rubrum S1H

Subject, 607 a.a., Excinuclease ABC subunit C from Pseudomonas fluorescens FW300-N1B4

 Score =  451 bits (1160), Expect = e-131
 Identities = 258/610 (42%), Positives = 358/610 (58%), Gaps = 17/610 (2%)

Query: 35  AALRTMPSSPGVYRMIDGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTMEV 94
           A L T+   PGVYRM D    +LYVGKA+NLK+R+ +Y +   L  +   ++     +E 
Sbjct: 9   AFLSTVSGRPGVYRMFDSDARLLYVGKAKNLKKRLASYFRKAGLAPKTAALVGRIAQVET 68

Query: 95  LTTHTEAEALLLESNLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLRKGGE 154
             T  E EALLLE  LIK+ +P YNILLRDDKS+PY+ + SD  FPR+   RG  +  G+
Sbjct: 69  TITANETEALLLEQTLIKEWRPPYNILLRDDKSYPYVFL-SDGQFPRLSIHRGAKKAKGK 127

Query: 155 YFGPFASAGAVTSTLTALQKTFLLRTCADNVFASRSRPCLLFQIKRCAAPCVDRVAEADY 214
           YFGP+ SAGA+  +L+ LQK F +R C D+ + +R+RPCL +QIKRC APCV  V    Y
Sbjct: 128 YFGPYPSAGAIRESLSLLQKAFFVRQCEDSFYKNRARPCLQYQIKRCKAPCVGLVEPEVY 187

Query: 215 KALVEEARAFLSGSSKALQHDLAKRMDEAAQALDYEQAAIFRDRIKALTNVQSHQDINLP 274
              V  +  FL G S AL  +L+  M+EAA  L++E+AA  RD+I  L  VQ  Q +   
Sbjct: 188 AEDVRHSVMFLEGRSNALADELSAAMEEAAVNLEFERAAELRDQISLLRRVQDQQSMEGG 247

Query: 275 TLGEADVIACHQAGGQTCVQVFFFRGGRNNGNRSFFPAHAGDEGLPEVLEAFLGQFYAGF 334
           T G+ DVIA     G  CV +   RGGR  G+++FFP    +E + EV+ AFLGQ++   
Sbjct: 248 T-GDVDVIAAFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEDVSEVMAAFLGQYFISS 306

Query: 335 PP---PREILLLTDIPHHDLVEQALCLR--AGHRVRLVVPRRGSRRKLIDHALANAREAL 389
           P    P E  L+ ++ H D       +    G  + +    RG+R +    A+ NA +AL
Sbjct: 307 PERDLPSE--LIVNVVHEDFPTLIAAIEELRGRELTISHRVRGTRARWQQLAVTNAEQAL 364

Query: 390 GRRLAESSAQRTLLEGTAVAFGLDGPLQRVEIYDNSHISGTHAVGGMVVAGPEGFMKAAY 449
           G RLA         +  A    LD P QR+E YD SH SG   V   VV GPEG +K+ Y
Sbjct: 365 GARLANRQHVAARFDALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGPIKSDY 424

Query: 450 RKFNIRSPDITPGDDYAMMREVMIRRFARARKEDPDRDRGQWPDLVLIDGGLGQLNAVRE 509
           R++NI    +TPGDDYA M + + RRF++ +  +     G+ PD++L+DGG GQL+  R+
Sbjct: 425 RRYNIEG--VTPGDDYAAMHQALTRRFSKLKDGE-----GKLPDILLVDGGKGQLSMARD 477

Query: 510 ALAEIGVEDVPLVGVAKGPDRDAGRERFFV-PGRPPFMLRHNDPVLYFIQRLRDEAHRFA 568
            L E+ V D+ L+GVAKG  R AG E  ++      F LR + P L+ IQ++RDEAHRFA
Sbjct: 478 VLNELAVPDLILLGVAKGATRKAGFETLYLNDAAHEFTLRGDSPALHLIQQIRDEAHRFA 537

Query: 569 IGSHRTRRSKAIGVSPLDSVPGIGASRKKALLHHFGSAKAVSQAGLTDLEAVEGISAALA 628
           I  HR RR K    S L+ V G+G +R++ LL HFG  + +S+A + ++    GIS  LA
Sbjct: 538 ITGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIEEIAKAPGISKKLA 597

Query: 629 KKLYDHFHSE 638
           + +Y + HSE
Sbjct: 598 ELIYANLHSE 607