Pairwise Alignments

Query, 639 a.a., Excinuclease ABC, C subunit (NCBI) from Rhodospirillum rubrum S1H

Subject, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

 Score =  384 bits (985), Expect = e-111
 Identities = 221/606 (36%), Positives = 340/606 (56%), Gaps = 21/606 (3%)

Query: 37  LRTMPSSPGVYRMIDGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTMEVLT 96
           L+T+ + PGVYRM + + +V+YVGKA++LK+R+ +Y + +    + + +++    ++V  
Sbjct: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70

Query: 97  THTEAEALLLESNLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLRKGGEYF 156
           THTE EAL+LE N IK+  P+YN+LLRDDKS+PYI   S H  PR+   RG  ++ GEYF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYI-FLSAHKHPRLSSHRGAKKRRGEYF 129

Query: 157 GPFASAGAVTSTLTALQKTFLLRTCADNVFASRSRPCLLFQIKRCAAPCV-DRVAEADYK 215
           GP+  +GAV  TL  +QK F +R C D V+++R+RPCL++QI RCA PCV   +++  Y+
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189

Query: 216 ALVEEARAFLSGSSKALQHDLAKRMDEAAQALDYEQAAIFRDRIKALTNVQSHQDINLPT 275
            +V   R FL G    +   L ++M++A++ L +E AA  RD+I+A+  VQ  Q ++  +
Sbjct: 190 EIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249

Query: 276 LGEADVIACHQAGGQTCVQVFFFRGGRNNGNRSFFPAHAGDEGLPEVLEAFLGQFY---- 331
           L + DV+   Q  G  C+ +   R G+  G+RS FP    D    EV E+FL Q+Y    
Sbjct: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309

Query: 332 -AGFPPPREILLLTDIPHHDLVEQALCLRAGHRVRLVVPRRGSRRKLIDHALANAREALG 390
            A   P R IL        + ++ A+   AG +V   V   G+R + +  A  NA  A+ 
Sbjct: 310 EARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAIT 369

Query: 391 RRLAESSAQRTLLEGTAVAFGLDGPLQRVEIYDNSHISGTHAVGGMVVAGPEGFMKAAYR 450
            ++          +      G+D  + R+E +D SH  G   +   VV   EG +K  YR
Sbjct: 370 TKMNHKMTISQRFKALQEELGMDA-ITRMECFDISHTMGESTMASCVVFNQEGPLKQEYR 428

Query: 451 KFNIRSPDITPGDDYAMMREVMIRRFARARKEDPDRDRGQWPDLVLIDGGLGQLNAVREA 510
           ++NI    IT GDDYA M +V+ RR+++        D  + PD++ IDGG GQLN   E 
Sbjct: 429 RYNITG--ITGGDDYAAMAQVLERRYSK------QLDSSKIPDIIFIDGGKGQLNRAYEI 480

Query: 511 LAEIGVEDVP----LVGVAKGPDRDAGRERFFVPGRPPFMLRHNDPVLYFIQRLRDEAHR 566
           ++    +D P    ++G+AKG  R  G E         F L  + P L+ IQ +RDE+H 
Sbjct: 481 ISSCW-QDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHN 539

Query: 567 FAIGSHRTRRSKAIGVSPLDSVPGIGASRKKALLHHFGSAKAVSQAGLTDLEAVEGISAA 626
            AI  HR +R K    S L+ + G+G  R++ALL + G  + + +A + ++  V GIS A
Sbjct: 540 HAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHA 599

Query: 627 LAKKLY 632
           LA+ +Y
Sbjct: 600 LAENIY 605