Pairwise Alignments

Query, 639 a.a., Excinuclease ABC, C subunit (NCBI) from Rhodospirillum rubrum S1H

Subject, 609 a.a., excinuclease ABC subunit C (RefSeq) from Shewanella loihica PV-4

 Score =  402 bits (1032), Expect = e-116
 Identities = 233/606 (38%), Positives = 345/606 (56%), Gaps = 20/606 (3%)

Query: 37  LRTMPSSPGVYRMIDGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTMEVLT 96
           L+T+ SS GVYRM D +G V+YVGKA++LK+R+ +Y + +   V+ Q +++    ++V  
Sbjct: 11  LKTVSSSAGVYRMYDAQGVVIYVGKAKDLKKRLSSYFRRNLPNVKTQALVSHIANIDVTL 70

Query: 97  THTEAEALLLESNLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLRKGGEYF 156
           T +E +AL+LE++ IK+  PRYN+LLRDDKS+PYI + S H  PR+   RG  R+ G YF
Sbjct: 71  TPSETDALILENDYIKQYMPRYNVLLRDDKSYPYIFL-SGHRHPRLAYHRGPQREKGHYF 129

Query: 157 GPFASAGAVTSTLTALQKTFLLRTCADNVFASRSRPCLLFQIKRCAAPCVDRVAEADYKA 216
           GP+ + GAV  +L  +QK F +R C D  + +RSRPCL +QI RC+APCV ++++ DY  
Sbjct: 130 GPYPNGGAVRESLHLMQKLFPIRQCDDLYYKARSRPCLQYQIARCSAPCVGKISDEDYAE 189

Query: 217 LVEEARAFLSGSSKALQHDLAKRMDEAAQALDYEQAAIFRDRIKALTNVQSHQDINLPTL 276
            V+ A  FL G  + +   L  +M++AA  L+YE AA +RD+I AL  V   Q+++  + 
Sbjct: 190 QVKLASLFLRGKDQQVIATLVGKMEQAAMDLNYEDAARYRDQISALRRVAEQQEVSSDS- 248

Query: 277 GEADVIACHQAGGQTCVQVFFFRGGRNNGNRSFFPAHAGDEGLPEVLEAFLGQFYAGFPP 336
           G+ DVI  + A G  C  + F R G+  G+RS++P+   +  + EVL AF+ QFY     
Sbjct: 249 GDMDVIGAYYASGIACFHLLFIRNGKIFGSRSYYPSVPDETEVSEVLRAFMLQFYLNVDS 308

Query: 337 ----PREILLLTDIPHHDLVEQALCLRAGHRVRLVVPRRGSRRKLIDHALANAREALGRR 392
               PREI++  +      +E+A+   +  R+ +    R  R   +  A ANA+ A+  R
Sbjct: 309 QRTLPREIVVSHEFEDIHELEEAIAQASNRRLLIKTKVRSERASFLRIADANAKNAVETR 368

Query: 393 LAESSAQRTLLEGTAVAFGLDGPLQRVEIYDNSHISGTHAVGGMVVAGPEGFMKAAYRKF 452
           L+  +           A      + R+E +D SH  G   V   VV   EG  K  YR++
Sbjct: 369 LSHQNTVEERFLLLEEALEQSQAINRMECFDISHTMGESTVASCVVFNREGPSKGEYRRY 428

Query: 453 NIRSPDITPGDDYAMMREVMIRRFARARKEDPDRDRGQWPDLVLIDGGLGQL----NAVR 508
           NI    ITPGDDYA M++ + RRF +   +      G+ PD++ IDGG+GQL      V 
Sbjct: 429 NISG--ITPGDDYAAMKQAIGRRFDKIEAD------GKIPDILFIDGGMGQLRIAQKVVN 480

Query: 509 EALAEIGVEDVPLVGVAKGPDRDAGRER-FFVPGRPPFMLRHNDPVLYFIQRLRDEAHRF 567
           E  A + V    L+GVAKG  R  G E   +      F L  +   L+ IQ +RDE+HRF
Sbjct: 481 EKFAHLDVAPT-LIGVAKGEGRKPGLETLIYGENEVAFSLPADSGALHLIQHIRDESHRF 539

Query: 568 AIGSHRTRRSKAIGVSPLDSVPGIGASRKKALLHHFGSAKAVSQAGLTDLEAVEGISAAL 627
           AI  HR +R K    S L+S+PG+G  R+KALL + G  + V  A +  L  V GIS  +
Sbjct: 540 AITGHRNKRQKTRNTSTLESIPGVGPKRRKALLQYLGGLQQVKGASVAQLSKVPGISLEM 599

Query: 628 AKKLYD 633
           A+ ++D
Sbjct: 600 AQTIHD 605