Pairwise Alignments

Query, 348 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 308 a.a., porin (RefSeq) from Shewanella amazonensis SB2B

 Score = 56.2 bits (134), Expect = 1e-12
 Identities = 84/354 (23%), Positives = 143/354 (40%), Gaps = 77/354 (21%)

Query: 6   FGSTMLVAV--GALTGTAVAADPISLSLGGKQEQYFGGVSTFKDGNREDGFGVDTDTEVY 63
           F  T+LV+    A   +A AA+P+++         +G ++     N E G   +++T V 
Sbjct: 5   FNKTLLVSALTAASLASAQAAEPLTV---------YGKLNVTVQSNDEAG---ESETVVQ 52

Query: 64  -----------FKGSTTLDNGITVAAMIQLEAEADNAVNADEQYVTVSGAFGKIQAGQKE 112
                      F+ S++L+   T+   +   ++A     A  Q+V + G FG +  G+ +
Sbjct: 53  SNASRLGVKGAFELSSSLEAFYTIEYEVDAGSDAKENFLARNQFVGLKGNFGALSVGRND 112

Query: 113 GAFDQLTVYAPVVGWVS-LNDTADWLGYAGTSSFARGSNYYNLDQTLNDDDAKISYFTPK 171
                 T+     G V   ND +  L      S  +G N   ++QT       ++Y +P+
Sbjct: 113 ------TMLKIAQGKVDQFNDLSGDL-----KSLFKGEN--RIEQT-------VTYLSPE 152

Query: 172 FYGFSAGASYTPQPGGSLVPATKKNRDLAQFGIGYDNKFGDIGVKASATAATQS------ 225
           F GF  GA+Y  +   S            + G      +GD  +K SA  A+ +      
Sbjct: 153 FGGFKVGATYAAEGAKS---------QAGEDGFSLAAMYGDASLKKSAFYASVAYDSEVK 203

Query: 226 NFWIYQGGLSANYAGFTLGGTYTEIDDESASSGTVYSTAPSSEGRLWSAGLSYATGPYSV 285
            + I +  + A  AG  LGG Y +  +E +  G       S  G L SA  + A      
Sbjct: 204 GYDILRATVQAKLAGLVLGGMYQQ--EEKSVDG------DSKTGYLVSAAYNIADVTLKG 255

Query: 286 GFAYAQTNHKSGGDNAIYKLGADYKMGPGISLVGNVFYGENDSNTAAGSREGVG 339
            F     + +  GD+  + +GADYK+G    +    FY   D  +A  +   +G
Sbjct: 256 QF----QDMEDKGDS--WSIGADYKLGKPTKIF--AFYTSRDMESAEDTDNYIG 301