Pairwise Alignments

Query, 605 a.a., AMP-dependent synthetase and ligase (NCBI) from Rhodospirillum rubrum S1H

Subject, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

 Score =  129 bits (323), Expect = 4e-34
 Identities = 132/527 (25%), Positives = 219/527 (41%), Gaps = 89/527 (16%)

Query: 5   RYP-----AVNYETCGNLLAMFLAQAERFGERPFLWSKSEGGYAPWSWASVHDQVIALAN 59
           RYP      +N +   +L+ MF     ++ ++P   +      A  ++  + ++  A A 
Sbjct: 8   RYPKDVPETINPDQYPSLVEMFEQSVHKYADQPAFMNMG----AVMTFRKLEERSRAFAA 63

Query: 60  AMI-DQGLAPGDRVVLASENRPDWTIADLAILAAGAIPVPAYATHTEADHLHVLDNVEAA 118
            +  D  L  GDRV L   N   + +A   +L AG I V     +T  +  H L++ +A 
Sbjct: 64  YLQNDLKLKKGDRVALMMPNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDADAR 123

Query: 119 MA------------IVSTPLVAERFLRAAARAKRRPLVVMMDFDDAVV---VPAGLTVLA 163
                         IV+   V    L +  +   R    ++DF    V   VP      A
Sbjct: 124 AIVIVSNFANTLEQIVANTQVKHVVLTSLGQMLPRAKGTIVDFVVKYVKGMVPKYDLPGA 183

Query: 164 WNAMMAEGEGRGVPAVVHRIQTDDLASIIHTSGTGGTPKGVMLAHRSILHN---CHGAFK 220
            +   A  +GR +  V   +  +D+A + +T GT G  KG +L HR+++ N     GA+ 
Sbjct: 184 ISMRKALHKGRRLQYVKPFMSGEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKGAYG 243

Query: 221 LLETIGLEEEVFLSFLPLCHSYEHTTGLFFPISLGAQVYFAEGAETLAANMVEAKPTIMT 280
            +   G   E+ ++ LPL H +  T      I +G +         +   + E +    T
Sbjct: 244 PVLQEG--RELVVTALPLYHVFALTVNCLLFIEMGGRNLLITNPRDIPGFVKELQKYPFT 301

Query: 281 AVPRLYEMMRARILRAVEKEGGLKEKMFREAVDLGRRRMDDPASLGVKDKLTDAALDKLV 340
           A+  +  +  A +                          +D   L  K+          V
Sbjct: 302 AITGVNTLFNALV------------------------NNEDFHELDFKNMKLAVGGGMAV 337

Query: 341 RHAVKARFGGRLKAMISGGGPLNPDVGYFFRALGIPVLQGYGLTETAPVVSCNMPKKVKM 400
           + AV  R+                      +  G+ +L+GYGLTE +P+V+ N P  +  
Sbjct: 338 QRAVAERWK---------------------KTTGVHLLEGYGLTECSPLVTGN-PYDLTD 375

Query: 401 NT--VGPALYGVDIRIASD----------GEILVKGPLVMDGYWNDPESTRAVLDPDGWL 448
            T  +G  +   ++RI  D          GE+ V+GP VM GYW  PE+T+ VL+ +GWL
Sbjct: 376 YTGAIGLPVPSTEVRIVDDAGNVVPNDQVGELQVRGPQVMQGYWQRPEATKEVLNAEGWL 435

Query: 449 HTGDVGTLDEDGFIQITDRKKDLIVNSGGHNISPQRVEGILGLEPEI 495
            TGD+   D+ G I I DRKKD+I+ S G N+ P  +E ++ L  ++
Sbjct: 436 STGDIVKFDDQGLIHIVDRKKDMILVS-GFNVYPNEIEDVVALHGKV 481