Pairwise Alignments

Query, 605 a.a., AMP-dependent synthetase and ligase (NCBI) from Rhodospirillum rubrum S1H

Subject, 568 a.a., AMP-binding family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  266 bits (680), Expect = 2e-75
 Identities = 193/578 (33%), Positives = 289/578 (50%), Gaps = 30/578 (5%)

Query: 43  APW---SWASVHDQVIALANAMIDQGLAPGDRVVLASENRPDWTIADLAILAAGAIPVPA 99
           APW   SW +  +    +A  +I  G+   DR V+ S+N P WT AD+  L + AI VP 
Sbjct: 3   APWHQVSWQAFDEISHKIAQVLIQLGVQVQDRCVILSQNCPQWTCADVGTLKSRAIVVPI 62

Query: 100 YATHTEADHLHVLDNVEAAMAIVSTPLVAERFLRAAARAKRRPLVVMMDFDDAVVVPA-- 157
           Y T T      ++++  A +  V     A+++  A       P +  +   DA V  A  
Sbjct: 63  YPTSTVEQASFIVNDAAAKVIFVDD---AKQYALACELQTLCPTLEHVIVFDAAVQLAQD 119

Query: 158 --------GLTVLAWNAMMAEGEGRGVPAVVHRIQTDDLASIIHTSGTGGTPKGVMLAHR 209
                    L  L ++   AE E R   A       DDL ++I+TSGT G PKGVML +R
Sbjct: 120 KPQHKHLDSLLALEYD-QSAELEQRLKDA-----NLDDLLTLIYTSGTTGDPKGVMLDYR 173

Query: 210 SILHNCHGAFKLLETIGLEEEVFLSFLPLCHSYEHTTGLFFPISLGAQVYFAEGAETLAA 269
           ++    H    +L       +V L+FLPL H +E     F+ +  G +  + +  + +  
Sbjct: 174 NMASTVHQHDLILPF--KTGDVSLAFLPLSHVFERGWS-FYVLCRGGRNVYLQNTQRVKE 230

Query: 270 NMVEAKPTIMTAVPRLYEMMRARILRAVEKEGGLKEKMFREAVDLGRRRMDDPASL---G 326
            +   +P  +  VPR  E + + +   V K    ++K+F  A+ +G R+ +        G
Sbjct: 231 AISAVRPHTLCVVPRFLEKVYSAVQDKVAKSAEGRKKLFAWAMGVGERQFEVSQGRVKGG 290

Query: 327 VKDKLTDAALDKLVRHAVKARFGGRLKAMISGGGPLNPDVGYFFRALGIPVLQGYGLTET 386
           +   L     +KLV   ++A  GGRLK M  GG  L+ +V  FF A+GIPVL GYG+TET
Sbjct: 291 LWLSLQWRLANKLVYSKLQAVLGGRLKFMPCGGAALDLNVASFFHAIGIPVLCGYGMTET 350

Query: 387 APVVSCNMPKKVKMNTVGPALYGVDIRIASDGEILVKGPLVMDGYWNDPESTRAVLDPDG 446
              V+CN        + G  L  + I++  D EILV+G  VM GY+N PE T A  + DG
Sbjct: 351 NATVTCNTLDNRVAGSNGKVLPEIQIKLGKDDEILVRGDTVMRGYYNRPEDTAAAFE-DG 409

Query: 447 WLHTGDVGTLDEDGFIQITDRKKDLIVNSGGHNISPQRVEGILGLEPEIGVGVVFGDRMP 506
           WL TGD G LD  G + ITDR K+L+  S G  I+PQRVEG +G  P I    V  D   
Sbjct: 410 WLKTGDAGRLDAHGNLFITDRIKELMKTSNGKYIAPQRVEGTVGRCPFIEQVAVIADARN 469

Query: 507 HLVALIVPEKEFLARWSKETGKPADLAL-VYEDADLRQAIGKAVERANAKLGTVEKIRKF 565
           ++ ALIVP  E L  W+KE G   +  + +   + + +   + ++    +L   E+I+KF
Sbjct: 470 YVTALIVPAFESLEAWAKEKGLKYESPIELLRHSHVVEHFEQRLKHLQQELAGFEQIKKF 529

Query: 566 ALLPEPMSVENDQLTHSMKARRHVLRDRYGALIAGLYS 603
            LLPE  S+E   +T ++K RR ++  +Y   I  +Y+
Sbjct: 530 TLLPEAFSMEAGLITPTLKLRRKMIYHKYVHEINAMYN 567