Pairwise Alignments

Query, 324 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 339 a.a., dipeptide ABC transporter permease DppB from Rahnella sp. WP5

 Score =  173 bits (439), Expect = 5e-48
 Identities = 117/339 (34%), Positives = 179/339 (52%), Gaps = 21/339 (6%)

Query: 1   MLTALASRFAQMIFVLVGISMIVFLIFFATPGSDPAARIAG-RNASQETLQVVRHDFGLD 59
           ML  +  R   +I   +GI+++ F      PG DP   +AG R  S E    +  D GLD
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPG-DPVTIMAGERGVSPERHAQLMADMGLD 59

Query: 60  RPLPVQYALMMKRLFITGDLTSFVNRGQKVVPTVVNAIPVTLSLVLGAGVLWVVGGVVVG 119
           +PL  QY   +  + + GDL + +     V    V     TL L + A +  ++ G+ VG
Sbjct: 60  KPLYQQYFHYVNGV-LHGDLGTSLKSRTPVWQEFVPRFKATLELGICAMIFAIIVGIPVG 118

Query: 120 VLAAMTRGRWLDRVLMILGLIGVSMPVFWLG-EVANLVS--------QSRFHDT-FLFSW 169
           VLAA+ RG   D   + + L G SMP+FW G  +  LVS          R  DT FL   
Sbjct: 119 VLAAVKRGSIFDHTAVGISLTGYSMPIFWWGIMLVMLVSVQLNLTPVSGRISDTVFLDDS 178

Query: 170 VPALGYKP----FSEDPAGWFKT---LVIPWFTLATLYVGLYGRVLRASLIEVLQEDFIR 222
           +P  G+      F  +P  +      +++P   L T+ + +  R+ R+S++EVL ED+IR
Sbjct: 179 LPLTGFMLIDTLFWGEPGDFVDAVMHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIR 238

Query: 223 TARAKGLSERRILLRHGLRSSLVAFVTMFGLDFGALVGGGALLAEVVFGLQGVGKVTYDA 282
           TARAKG+S  R+++ H LR++L+  VT+ GL  G L+ GGA+L E +F   G+G+   DA
Sbjct: 239 TARAKGVSRMRVIVIHALRNALLPVVTIIGLQVGTLL-GGAILTETIFSWPGLGRWLIDA 297

Query: 283 MQNLDLPTIMATVIYASFFVVFANFIVDVLYAFLDPRVR 321
           +Q  D P +   V+  +  ++  N +VDVLY  ++PR+R
Sbjct: 298 LQRRDYPVVQGGVLLVATLIIVVNLLVDVLYGVVNPRIR 336