Pairwise Alignments

Query, 511 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

Subject, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  449 bits (1156), Expect = e-131
 Identities = 239/453 (52%), Positives = 305/453 (67%), Gaps = 8/453 (1%)

Query: 57  LVEDTPVQARTYLDYLDGGPWTIEHVETGAEALAVLERRPPSLMLLDIHLPDMDGMEILR 116
           +VEDT   A  Y  YL      I  V TG +A+  + RR P L+LLD+ LPDM GM++L 
Sbjct: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60

Query: 117 RVRSLPLSMGVVMITSNASISLAVAAMQAGANDFLVKPFSRDRLMVTLRNVIDN-QRLSR 175
            V+     + +V +T++ SI  AV AM+ GA DFL+KP   DRL VT+ N I    +L  
Sbjct: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120

Query: 176 EVETLRENLGIAAFQGFVGSSAAMQRVYRLIEASAASTATVFITGESGSGKELAAEALHR 235
           +V+   +N     +QGF+GSS  MQ VYR I+++A+S A++FITGESG+GKE+ AEA+H 
Sbjct: 121 DVDNKNQN-----YQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHA 175

Query: 236 YGPRVKGPFVALNCGAIPRELMESEVFGHVRGSFTGAVSDRDGAAAQANGGTLFLDEICE 295
              R   PF+A+NC AIP++L+ESE+FGHV+G+FTGA ++R GAA  A+GGTLFLDE+CE
Sbjct: 176 ASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCE 235

Query: 296 MDPNLQTKLLRFLQTGMVQKVGGDRPEKVDVRIVCATNRDPLEEVKAGRFREDLYYRLHV 355
           MD +LQTKLLRF+QTG  QKVG  + + VDVR VCATNRDP +EV+ GRFREDLYYRL+V
Sbjct: 236 MDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYV 295

Query: 356 IPIRLPALRDREGDVLEIADHFLASIATEEKKSFRGFSPAVAQALLAYDWPGNVRQLINV 415
           IP+ LP LR R  DV+EIA   L  ++ EE K F   S  V +    Y+WPGNVRQL NV
Sbjct: 296 IPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNV 355

Query: 416 LRNVVVLNNGPEVTLGMLPQAIADADGEAIAGEAAEGESPALFRQQDIEPLWVVEKRAVE 475
           LRNVVVLN G E+TL MLP  +               E+       +I PLW+ EK+A+E
Sbjct: 356 LRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKV--SVHEIFPLWMTEKQAIE 413

Query: 476 RAIGACGGNIPRAAALLRVSPSTLYRKKQAWEE 508
           +AI AC GNIPRAA  L VSPST+YRK Q W E
Sbjct: 414 QAIEACDGNIPRAATYLDVSPSTIYRKLQTWNE 446