Pairwise Alignments

Query, 511 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  328 bits (842), Expect = 2e-94
 Identities = 197/473 (41%), Positives = 265/473 (56%), Gaps = 23/473 (4%)

Query: 55  ILLVEDTPVQARTYLDYLDGGPWTIEHVETGAEALAVLERRPPSLMLLDIHLPDMDGMEI 114
           IL+V+D           L G  +  E  + G  A+A + +R    +L+D+ +  MDG+  
Sbjct: 6   ILIVDDDAAHRSMLRTMLRGWGYATEEADDGESAVAKVRQRAWDAVLMDVRMARMDGIAA 65

Query: 115 LRRVRSLPLSMGVVMITSNASISLAVAAMQAGANDFLVKPFSRDRLMVTLRNVIDNQRLS 174
           LR +     +  V+++T+ +S+  AV A++ GA D+L+KP   D L  TL   +D+ RL+
Sbjct: 66  LRHILDWNPATPVLIMTAFSSVDTAVEALRTGAYDYLIKPLDFDVLRHTLERALDHTRLA 125

Query: 175 REVETLRENLGI-------AAFQGFVGSSAAMQRVYRLIEASAASTATVFITGESGSGKE 227
            E   LRE L          A  G +G SA M  +  +I   A S ATV ITGESG+GKE
Sbjct: 126 SENRELRERLSSQGGAGAPGASHGIIGRSAPMHELVEMIATVAPSEATVLITGESGTGKE 185

Query: 228 LAAEALHRYGPRVKGPFVALNCGAIPRELMESEVFGHVRGSFTGAVSDRDGAAAQANGGT 287
           L A ALH    R   P V +NC A+   L+ESE+FGH RG+FTGA   R+G   QA+GGT
Sbjct: 186 LVARALHAASHRSAKPLVTVNCAALTETLLESELFGHERGAFTGADRRREGRFVQADGGT 245

Query: 288 LFLDEICEMDPNLQTKLLRFLQTGMVQKVGGDRPEKVDVRIVCATNRDPLEEVKAGRFRE 347
           LFLDEI EM   LQ KLLR LQ G VQ+VG D P  VDVR++ ATNRD  EE  AGRFRE
Sbjct: 246 LFLDEIGEMPLTLQAKLLRALQQGEVQRVGSDTPLTVDVRVIAATNRDLREEAAAGRFRE 305

Query: 348 DLYYRLHVIPIRLPALRDREGDVLEIADHFLASIATEEKKSFRGFSPAVAQALLAYDWPG 407
           DLYYRL+VI + +PALR+R GDV  +A  FL     + +K  +GF+P     LL +DWPG
Sbjct: 306 DLYYRLNVIAVHVPALRERAGDVPLLAAFFLDRYTEKNRKHLKGFTPQAMDMLLRHDWPG 365

Query: 408 NVRQLINVLRNVVVLNNGPEVTLGMLP-------QAIADADGEAIAGEAAEGESP----- 455
           NVR+L N +   V+L  G  VT   LP         IA + G A  GEA  G +P     
Sbjct: 366 NVRELENAIERAVILATGDYVTERELPLHFGGGGSGIAGSGGSAGTGEAGAGNAPADGDG 425

Query: 456 -ALFRQQDIEPLWVVEKRAVERAIGACGGNIPRAAALLRVSPSTLYRKKQAWE 507
            A +    +E L   E+RA+   +     N   AA  L ++ +TL+ K + ++
Sbjct: 426 LAPYAGLSLEDL---ERRAIIATLRETADNKSEAARRLGITRATLHNKLKKYD 475