Pairwise Alignments

Query, 511 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

Subject, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  298 bits (762), Expect = 4e-85
 Identities = 184/449 (40%), Positives = 250/449 (55%), Gaps = 11/449 (2%)

Query: 55  ILLVEDTPVQARTYLDYLDGGPWTIEHVETGAEALAVLERRPPSLMLLDIHLPDMDGMEI 114
           +LLVED           L    + +       +A  +L +RP  L++ D+ LP M+GME+
Sbjct: 6   VLLVEDELSMLLGMQHALSQAGYEVATAGDAEKAQQLLRQRPFDLVITDLRLPGMNGMEL 65

Query: 115 LRRVRSLPLSMGVVMITSNASISLAVAAMQAGANDFLVKPFSRDRLMVTLRNVIDNQRLS 174
           L  +  L    GV++IT+   + LAV A++AGA DFL KPF RD L++ +        L 
Sbjct: 66  LEGICELYPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFPRDGLLIAVERYFRFLDLK 125

Query: 175 REVETLRENLGIAAFQGFVGSSAAMQRVYRLIEASAASTATVFITGESGSGKELAAEALH 234
           RE   LR   G      F+G S  M +V+  I A A S   V + G SGSGKEL A ALH
Sbjct: 126 RENARLR---GERDDGEFIGESPMMLKVFERIRAIAGSCVPVLVLGPSGSGKELVAGALH 182

Query: 235 RYGPRVKGPFVALNCGAIPRELMESEVFGHVRGSFTGAVSDRDGAAAQANGGTLFLDEIC 294
           R   R   PF+ +NC A+P  L+ESE+FGH +G+FTGA   R G    A+GGTLF DE  
Sbjct: 183 RLSKRRDKPFIKINCAALPEHLLESELFGHEKGAFTGAQQARKGKFEAADGGTLFFDEAG 242

Query: 295 EMDPNLQTKLLRFLQTGMVQKVGGDRPEKVDVRIVCATNRDPLEEVKAGRFREDLYYRLH 354
           EM   +Q KLLR L+   V  VGG+ P KVDVR V AT RD  E + AG FREDLYYR++
Sbjct: 243 EMPLAVQAKLLRVLEDQEVTPVGGNMPRKVDVRTVFATARDLEEAIGAGTFREDLYYRIN 302

Query: 355 VIPIRLPALRDREGDVLEIADHFLASIATEEKKSFRGFSPAVAQALLAYDWPGNVRQLIN 414
           V+P+ LP LR+R GDV  +A+ FL     +  +    FS     ALLAYD+PGNVR+L N
Sbjct: 303 VVPVTLPPLRERGGDVALLAERFLRRFCAQHDRQVT-FSEQARNALLAYDYPGNVRELRN 361

Query: 415 VLRNVVVLNNGPEVTLGMLPQAIADADGEAIAGEAAEGESPALFR-QQDIEPLWVVEKRA 473
            +   V+L    ++ +G LP+ I DA       +A++ + P   R  Q  + +   EK+ 
Sbjct: 362 AIERAVILCAEDKIHVGHLPKRIRDAT------QASQEQQPEETRFVQLADGVAQFEKKR 415

Query: 474 VERAIGACGGNIPRAAALLRVSPSTLYRK 502
           +  A+   GG   RAA LL ++   L+ K
Sbjct: 416 ILEALQKTGGRRIRAAELLGITRKQLWLK 444