Pairwise Alignments

Query, 511 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

Subject, 463 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  415 bits (1066), Expect = e-120
 Identities = 228/460 (49%), Positives = 297/460 (64%), Gaps = 12/460 (2%)

Query: 53  PFILLVEDTPVQARTYLDYLDGGPWTIEHVETGAEALAVLERRPPSLMLLDIHLPDMDGM 112
           P ILL+EDTP     Y   + G    +   +T    L   +   P +++LD+ LPD DG+
Sbjct: 4   PPILLIEDTPSLQLVYDAIIRGAGHAVICADTADAGLTGFKTHKPRVVVLDLMLPDRDGL 63

Query: 113 EILRRVRSLPLSMGVVMITSNASISLAVAAMQAGANDFLVKPFSRDRLMVTLRNVI-DNQ 171
           E++R   +L      V+IT+N SI+ AV AM+ GA +FLVKPF   R +  + N + D+ 
Sbjct: 64  ELMRECLALNPDARFVVITANGSINRAVEAMRGGAYEFLVKPFDEGRFLAAIDNALRDHV 123

Query: 172 RLSREVETLRENLGIAAFQGFVGSSAAMQRVYRLIEASAASTATVFITGESGSGKELAAE 231
           R   E   +  +     F+GF+GSS  MQ VYR I++ + S ATVFITGESG+GKE+ A+
Sbjct: 124 RPPEETPEVLND-----FRGFIGSSDTMQDVYRRIQSVSRSMATVFITGESGTGKEVCAQ 178

Query: 232 ALHRYGPRVKGPFVALNCGAIPRELMESEVFGHVRGSFTGAVSDRDGAAAQANGGTLFLD 291
           A+H    R   PFV LNCGAIP +L+ESEVFGH+RGSFTGA++D+ GAAA A+GGTLFLD
Sbjct: 179 AVHDSSTRAGKPFVPLNCGAIPSDLLESEVFGHLRGSFTGAIADKIGAAAAADGGTLFLD 238

Query: 292 EICEMDPNLQTKLLRFLQTGMVQKVGGDRPEKVDVRIVCATNRDPLEEVKAGRFREDLYY 351
           EICEMD NLQTKLLRFLQT  +Q VG  R  K++VRI+CATNR+PLEEV+ GRFREDLYY
Sbjct: 239 EICEMDLNLQTKLLRFLQTSTIQPVGATRARKINVRIICATNRNPLEEVRRGRFREDLYY 298

Query: 352 RLHVIPIRLPALRDREGDVLEIADHFLASIATEEKKSFRGFSPAVAQALLAYDWPGNVRQ 411
           RL V+PI LP LR+R  DV+ IA   +   A EE + F G +P V        WPGNVRQ
Sbjct: 299 RLQVVPIHLPPLRERGEDVIAIARDAVRKFAAEEGRRFTGLAPEVEALFRTLPWPGNVRQ 358

Query: 412 LINVLRNVVVLNNGPEVTLGMLPQAIADADGEAIAGEAAEGESPALFRQQDIEPLW---- 467
           +INV+RNVVVLN+GP VT  MLP  I     EA+   A     P       ++ L     
Sbjct: 359 VINVMRNVVVLNDGPLVTQTMLPLEILH-HHEAMTNNAGPVGLPPEKPVVSLDGLMGRTM 417

Query: 468 -VVEKRAVERAIGACGGNIPRAAALLRVSPSTLYRKKQAW 506
             +E+  +E  I   GG++P+AA +L +SPST+YRK++AW
Sbjct: 418 AEIERMVIEETIARHGGSVPKAARVLDLSPSTIYRKREAW 457