Pairwise Alignments

Query, 485 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  114 bits (284), Expect = 1e-29
 Identities = 75/218 (34%), Positives = 120/218 (55%), Gaps = 25/218 (11%)

Query: 238 AEALNGSSESSRQVSSMARDLSERTAEGVESMAQAARTMTQSVSGILESVRHSDALSRSA 297
           +E +   + S +Q+ S   ++SE T   V+ + QAAR   Q  S ++ +V++ D LS + 
Sbjct: 338 SEHMGLMATSVQQMVSTISEISESTNIAVDGVNQAARNAEQGRSVVVTTVKNIDLLSSTL 397

Query: 298 LTDTERATEKVAALSTAAERIGEVVGLISAVAAQTNLLALNATIEAARAGDAGKGFAVVA 357
               +++   + +L+   E+IG  V +I  +A QTNLLALNA IEAARAG+ G+GFAVVA
Sbjct: 398 ----QKSQHSIGSLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVA 453

Query: 358 NEVKTLATQTARATDEIAAQVTGIQ---------------------GATRDSAAVIATIS 396
           +EV++LAT+T ++T+EI   V+ IQ                      A+R     +  I 
Sbjct: 454 DEVRSLATRTHQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSASRQLDESLQQIL 513

Query: 397 RSMTDISATVSAIAAAMEDQGKASQLVAGTIDAVSSLA 434
           R M  I      IAAA+E+QG     V+ +I  +++++
Sbjct: 514 RDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAELNTIS 551



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 13/166 (7%)

Query: 157 VTLVWVIVRMTTSFATAEQAVVEANTAREDAR--KVAEERLRLEAAAAEAQVTAVRGVAD 214
           V+++  I   T   A    A +EA  A E  R   V  + +R  A         +  V  
Sbjct: 418 VSIIQGIAEQTNLLAL--NAAIEAARAGEQGRGFAVVADEVRSLATRTHQSTEEITRVVS 475

Query: 215 DLEGSVGTALGALKDDSATMRRAAEALNGSSESSRQVSSMARDL------SERTAEGVES 268
           +++  +   +    D      +  E L+ S +    +  + RD+      S+R A  +E 
Sbjct: 476 NIQSQMSQVVD---DIDLCNNQGQETLSASRQLDESLQQILRDMHTIQDNSQRIAAAIEE 532

Query: 269 MAQAARTMTQSVSGILESVRHSDALSRSALTDTERATEKVAALSTA 314
                  +++S++ +     ++   ++  LT+ +  + +  A+  A
Sbjct: 533 QGSVMNHVSESIAELNTISENNMRSAQQCLTEVDTVSRQAHAMDEA 578