Pairwise Alignments

Query, 468 a.a., Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) from Rhodospirillum rubrum S1H

Subject, 316 a.a., D-alanyl-D-alanine endopeptidase from Vibrio cholerae E7946 ATCC 55056

 Score = 63.5 bits (153), Expect = 9e-15
 Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 27/234 (11%)

Query: 43  QAFAGYASIVVDASTGRVLQARNADMRNYPASLTKMMTLYLLFEAIDNGKYTLESRLPVS 102
           Q  +  +++V+D  T  ++ + N D     AS+TK+MT  +  +A    K  ++++LP++
Sbjct: 43  QELSANSALVIDLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDA----KLPMDAKLPIT 98

Query: 103 -KWAANQAPSKLGVAAGTGIKVEHAIKALVTKSANDVAVVIAEALGGTEANFSALMTRKA 161
            K A         V  G+ I  +  +   +  S N  A  +A    G    F   M  KA
Sbjct: 99  IKDAKEMKGVHSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKA 158

Query: 162 AALGMSQTTFRNASGLPNNGQMTTARDMAVLSMALIRHFPNHYRFFATQ----------- 210
            ALGM  T F   +GL +   ++TARD+ VL  A  + +P   +  AT            
Sbjct: 159 KALGMKNTRFVEPTGL-SAKNVSTARDLVVLLKA-SKKYPLLGKLSATDKKTVTFSKPRY 216

Query: 211 --SFRFGNRTITTHNHVVREYPGADGLKTGYIQASGFNVASSAVRNGRRLVAVV 262
              FR  NR +   N  +      D  KTG+  A+G +      + GRR VA V
Sbjct: 217 TLDFRNTNRLVHNDNWKI------DLTKTGFTNAAG-HCLVMRTQMGRRQVAFV 263