Pairwise Alignments

Query, 779 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) from Rhodospirillum rubrum S1H

Subject, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

 Score =  312 bits (799), Expect = 6e-89
 Identities = 183/416 (43%), Positives = 264/416 (63%), Gaps = 29/416 (6%)

Query: 13  ALALASQRRHEYATLEHLLLALVDDQDAV--SVLKACSVDVEKLRKQLAEFVEH--ELTG 68
           A +LA  R H+Y    HL++AL+D   +    +L   +VDV +LR +L E ++   +++G
Sbjct: 17  AQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQLRSKLGEMLDRLPKVSG 76

Query: 69  LVVAAPEGDPKPTAGFQRVVQRAAIHVQSSGREQVTGANILVALFSERESHAVYFLQMQD 128
           +      GD + ++    +        Q      ++    L+A   ++     + L+   
Sbjct: 77  I-----GGDVQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLAAIEDKGPLG-HLLKEFG 130

Query: 129 MTRLDAVNYISHGIAKAPGHGQARAPRGADEETKSEETATVKKGREALDAYCVNLNEKAA 188
           +T       +S  I K  G  +   P        +EE       R+AL+ + ++L E+A 
Sbjct: 131 LTE----KKVSEAIEKIRGGQKVNDPN-------AEEL------RQALEKFTIDLTERAE 173

Query: 189 EGKIDPLIGRDQEVERTIQILCRRNKNNPLLVGDPGVGKTAIVEGLARRIVHKEVPEVLH 248
           +GK+DP+IGRD E+ RTIQ+L RR KNNP+++G+PGVGKTAIVEGLA+RI++ EVPE L 
Sbjct: 174 QGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLR 233

Query: 249 NATIFSLDMGALLAGTRYRGDFEERLKAVVGELEAYEG-AVLFIDEIHTVIGAGATSGGS 307
              + SLDMGAL+AG +YRG+FEERLK+V+ EL   EG  +LFIDE+HT++GAG    GS
Sbjct: 234 GRRVLSLDMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAG-KGEGS 292

Query: 308 MDASNLLKPALAQGLLRCVGSTTYKEFRNHFEKDRALVRRFQKIDVNEPSVEDTVKILRG 367
           MDA N+LKPALA+G L CVG+TT  E+R + EKD AL RRFQK+ V+EP+VEDT+ ILRG
Sbjct: 293 MDAGNMLKPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRG 352

Query: 368 IKSYYEDHHKVRYTNDAVRAAVELSNKYINDRKLPDKAIDVIDEVGAARMLLPESR 423
           +K  YE HH V  T+ A+ AA  LS++YI+DR+LPDKAID+IDE  ++  +  +S+
Sbjct: 353 LKERYELHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQIDSK 408



 Score =  280 bits (715), Expect = 3e-79
 Identities = 147/346 (42%), Positives = 219/346 (63%), Gaps = 7/346 (2%)

Query: 403 DKAIDVIDEVGAARMLLPESRRRKTVTVRDIEEIVAKIARIPPKSVSRDDQAVLKSLERD 462
           +K +D+  +     M L     R  VT  +I E+++K   IP   +   ++  L  +E  
Sbjct: 510 EKQLDLAAQAEMQEMTL----LRNKVTDAEIAEVLSKQTGIPVSKMLEAEKEKLLRMEDV 565

Query: 463 LKTMVFGQDQAIEALASAIKLARAGLREPTKPIGNYLFSGPTGVGKTEVARQLARILGIE 522
           L   V GQ +A+E +A+AI+ +RAGL +P +PIG++LF GPTGVGKTE+ + LA  L   
Sbjct: 566 LHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDS 625

Query: 523 ---LVRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAVDQQPHCVLLLDEIEKAHPD 579
              +VR DMSE+ME+HSV+RL+GAPPGYVG+++GG LT+AV ++P+ V+LLDE+EKAHPD
Sbjct: 626 EDAMVRVDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPD 685

Query: 580 LFNILLQVMDHGKLTDHNGKHVDFRNVILIMTTNAGAQMLAKNAMGFGRETRSGDDTEEI 639
           +FNILLQV+D G+LTD  G+ VDFRN ++IMT+N G+  + +N      +       + +
Sbjct: 686 VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQENFARLDYQGIKEQVMDVV 745

Query: 640 ERSFSPEFRNRLDAIIPFANLAAETVGMVVDKFVMELEAQLADRNVTIELTDKARSWLAE 699
            + F PEF NR+D  + F  L  E +  +    +  L  +LA+R+  +E+ D+A   +A 
Sbjct: 746 SKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYQLEVDDEALDLIAH 805

Query: 700 KGYDRRMGARPLARIIQETIKKPLAEELLFGKLTKGGRVKVGVKDG 745
            G+D   GARPL R IQ+ ++ PLA+ +L GK   G  + + VKDG
Sbjct: 806 VGFDPVYGARPLKRAIQQNVENPLAKSILAGKFLPGSPILLSVKDG 851