Pairwise Alignments

Query, 478 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

Subject, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  445 bits (1145), Expect = e-129
 Identities = 242/460 (52%), Positives = 309/460 (67%), Gaps = 22/460 (4%)

Query: 6   MVEDSPSNAELYATYLRASGMTVTLAGTGGQALDYLVADASAFDLVVLDLGLPDMDGLEI 65
           MVED+ S A LY +YL    + + + GTG  A++ +       DL++LDL LPDM G+++
Sbjct: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREP--DLILLDLRLPDMTGMDV 58

Query: 66  LRKLGGPAAMPPTVVLTGSGSVRRAVEAMREGAIDFLVKPCGADKLRTAVEEALERRTPT 125
           L  +   +   P V +T  GS+  AVEAMR GA DFL+KPC AD+LR  V  A+ + +  
Sbjct: 59  LYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKL 118

Query: 126 AEGRAPAADPTRAKRGPSGFLGSSPAMSNVFSLIEAAAASSTASVFITGETGTGKELCAN 185
                   D     +   GF+GSS  M  V+  I++AA SS AS+FITGE+GTGKE+CA 
Sbjct: 119 KN------DVDNKNQNYQGFIGSSQTMQAVYRTIDSAA-SSKASIFITGESGTGKEVCAE 171

Query: 186 AIHNLSDRRNGPFVAINCGAIPRELMESEIFGHRKGAFTGAINDREGAASRADGGTLFLD 245
           AIH  S R + PF+AINC AIP++L+ESE+FGH KGAFTGA  +R+GAA  ADGGTLFLD
Sbjct: 172 AIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLD 231

Query: 246 ELCEMDLDLQVKLLRFIQTGTYRKVGDGADRQVNIRFVCATNRDPLVEVKAGRFREDLYY 305
           ELCEMDLDLQ KLLRFIQTGT++KVG    + V++RFVCATNRDP  EV+ GRFREDLYY
Sbjct: 232 ELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYY 291

Query: 306 RLYVVPIHLPPLSARGDDIILLARRFLADFSKLEGKRFQEFSADALGRIMAYRWPGNVRQ 365
           RLYV+P+HLPPL ARGDD+I +A   L   SK EGK F   SA+ + R   Y WPGNVRQ
Sbjct: 292 RLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQ 351

Query: 366 LENVVRNIVVLNDGVTVEPTMLPPPLDCVEAVV--SLPVDPQSATGAVVGGGTLSLDEIL 423
           L+NV+RN+VVLN+G  +   MLPPPL+ + A +  +LP+  ++          +S+ EI 
Sbjct: 352 LQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHEN---------KVSVHEIF 402

Query: 424 ARPLAELEAMAIDAALRLSDNNVTRAARLLDVSPSTIYRK 463
             PL   E  AI+ A+   D N+ RAA  LDVSPSTIYRK
Sbjct: 403 --PLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRK 440