Pairwise Alignments

Query, 243 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

Subject, 223 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  122 bits (305), Expect = 8e-33
 Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 9/200 (4%)

Query: 37  LAAWAL--ALVLGGMIGIMRTLPSKGLQRLGAAYVEVFRNIPLLVQLFLWYFVLPELLPP 94
           +A+W L  AL+L   +  +R      L  L   Y+  FR  PLLVQLFL Y+ LP++ P 
Sbjct: 25  MASWGLVFALILALFLANIRVFKVPVLDPLSQLYISFFRGTPLLVQLFLLYYGLPQVFPL 84

Query: 95  SWGLWLKQIPDAPFYTSVVGIGCFTSARVAEQIRAGITTLPRGQAMASTALGLTLPQTYR 154
             GL      DA F  +V+G+    +A +AE IRA I  + R Q  AS ++G+T  Q  R
Sbjct: 85  LVGL------DA-FSAAVIGLTLHFAAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMR 137

Query: 155 YILLPMALRIVLPPLTSEFLNTVKNTSVALTISLMELTARTRAMQEFSFQVFEAFAAATL 214
            I+LP A R+ LP L + F++ +K+TS+A T+ + E+ A+ +     SF+ FEAF A  L
Sbjct: 138 RIILPQATRVALPSLMNYFIDMIKSTSLAFTLGVAEIMAKAQMEASSSFRFFEAFLAVAL 197

Query: 215 IYVLINVVVVAVMRVIEHRV 234
           IY ++ +V+  +    E ++
Sbjct: 198 IYWVVVLVLTRLQSWAEQKL 217