Pairwise Alignments

Query, 406 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

 Score =  160 bits (404), Expect = 6e-44
 Identities = 77/215 (35%), Positives = 132/215 (61%), Gaps = 1/215 (0%)

Query: 181 EAIYIDVLGRTFGISLTVTVLCLLLGFPVAYLLANLPPRQANLLMILVLLPFWTSLLVRT 240
           + +Y  V+  +F +++  T++CL++G+P AY++A +P +    ++ L+++PFWT+ L+RT
Sbjct: 59  DPLYGKVMLHSFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRT 118

Query: 241 AAWVVLLQDQGLVNNLLIWLGVIEKPLRLMYNRVGVIVAMTHVLLPFMILPLYSVMKGIS 300
               ++L  QG++N  L+ LG+I+ PLR+M+    V++ + ++LLPFMILPLYS ++ + 
Sbjct: 119 YGLKIVLGTQGILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKLD 178

Query: 301 PVYLRAARSLGATPTIAFLRVYLPQCLPGFGAGALLTFILALGYYITPALVGGAADQMLS 360
             Y+ AAR LGA      +RV LP  +PG   G LL  + ALG +    L+GGA + ++ 
Sbjct: 179 GTYIEAARDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIG 238

Query: 361 YFIAFYTSDTVNWGMASALG-AVLLAATLVLYAVY 394
             I     +  +W   +A   A+ LA  ++LYA Y
Sbjct: 239 NVIKSQVLNARDWPFGAATSIALTLAMAIMLYAYY 273