Pairwise Alignments

Query, 326 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 336 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  193 bits (490), Expect = 6e-54
 Identities = 123/337 (36%), Positives = 184/337 (54%), Gaps = 21/337 (6%)

Query: 3   LFLFALRRLATSIPSLLIILVGVFLLLQLAPGDTVDALLAQMGGGD---AQIIETLRHFY 59
           +F F  RRL   IP+   I +  F L+++ PGD V+ ++ +        AQ +E L    
Sbjct: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERL---- 56

Query: 60  GLDAPVAVQLGRYLLRLVQFDLGYSAIYGKPVIDVIVERLPVTLLLMGASLVVAVSGGVA 119
           GL+ P+  Q   Y+ +L Q DLG S    + V        P TL L  A+L+ A   G+ 
Sbjct: 57  GLNKPLYAQYLDYIGKLAQGDLGESLRTRESVWTEFSSLFPATLELSMAALLFAGILGLL 116

Query: 120 LGVLAARRVNKWPDTLISTLGLVFYATPSFWLGLMAVVVFAVKLGWLPPGGFEEVGAGYQ 179
            GV+AA +     D  +  + L  Y+ P FW GL+ ++ F+V LGW P  G  ++    +
Sbjct: 117 AGVIAALKRGSLFDHGVMGVSLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIE 176

Query: 180 GLT--------------RALDIARHMALPTITLSLIFLATYLRIMRASMLEVSSLDFVRT 225
             T                LD   H+ LP I L  I LA   R+ R+SMLEV   D++RT
Sbjct: 177 PKTGFMLIDTLLADEPGAFLDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRT 236

Query: 226 ARAKGVDETKIVTHHVLRNALLPMLTLIGLNASTMLGGSVVVESVFTLPGLGRLAYESVV 285
           A+AKG+  +++V  H LRNAL+P+LT++GL   T+L G+V+ E++F+ PG+G+   E++ 
Sbjct: 237 AKAKGLSPSRVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIG 296

Query: 286 QRDLNTLLGIVLLSAVLVIVVNFIVDLLYARLDPRIR 322
            RD   +   +LL A LVI+VNF+VD+LY   +PRIR
Sbjct: 297 ARDYPVVQNGILLIACLVILVNFVVDILYGFANPRIR 333