Pairwise Alignments

Query, 326 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 305 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  209 bits (532), Expect = 7e-59
 Identities = 125/321 (38%), Positives = 187/321 (58%), Gaps = 21/321 (6%)

Query: 6   FALRRLATSIPSLLIILVGVFLLLQLAPGDTVDALLAQMGGGDA--QIIETLRHFYGLDA 63
           F LRRL  +I   + + V  F LL L+ GD   A+    GG +A  + IE +R  YGLD 
Sbjct: 4   FLLRRLGIAICVAITVSVISFSLLHLS-GDLATAI----GGPEATSEQIEQIRVQYGLDK 58

Query: 64  PVAVQLGRYLLRLVQFDLGYSAIYGKPVIDVIVERLPVTLLLMGASLVVAVSGGVALGVL 123
           P+  Q   +L  L++ DLG S  + + V +++  RLP+TL L   +L +A+   + LGVL
Sbjct: 59  PLPTQYFNWLGDLLRLDLGDSFFFQESVYNLVASRLPITLGLGAMALGIALLVAIPLGVL 118

Query: 124 AARRVNKWPDTLISTLGLVFYATPSFWLGLMAVVVFAVKLGWLPPGGFEEVGAGYQGLTR 183
           AA + + W D L  ++ ++  A PSFW  LM +VVFAV L WLP  G   +         
Sbjct: 119 AAVKRDTWVDRLALSIAVLGQAMPSFWFALMLIVVFAVTLKWLPVSGNSTL--------- 169

Query: 184 ALDIARHMALPTITLSLIFLATYLRIMRASMLEVSSLDFVRTARAKGVDETKIVTHHVLR 243
                 H  +P I L        +R+ RA ML+V S D++RTARAKG+   +++  H LR
Sbjct: 170 -----LHFVMPAIALGYYATPAIMRLTRAGMLDVLSSDYIRTARAKGLRPARVLFKHALR 224

Query: 244 NALLPMLTLIGLNASTMLGGSVVVESVFTLPGLGRLAYESVVQRDLNTLLGIVLLSAVLV 303
           NAL+P++ L  +    MLGGSVV+E+VF+L G+G+LA++++ + D   +  +VLL AV+ 
Sbjct: 225 NALIPVVALAAVEFGFMLGGSVVIETVFSLQGIGQLAWDAIARDDFPVVQAVVLLIAVIY 284

Query: 304 IVVNFIVDLLYARLDPRIRAK 324
           I++  + D+L A LDPRIR +
Sbjct: 285 IILTLLADVLNALLDPRIRVR 305