Pairwise Alignments

Query, 276 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  162 bits (411), Expect = 6e-45
 Identities = 92/273 (33%), Positives = 154/273 (56%), Gaps = 12/273 (4%)

Query: 6   RYFRNPSAVLGLVLL----IAVLGLAL-SADLLFPRDPLALAGRPLQWPLDNPRFWLGTD 60
           R+ RN +A++ L +L    +AV+ L + SA      D  A+   P      +   W GTD
Sbjct: 32  RFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGP------SAEHWFGTD 85

Query: 61  NSGRDIAAQIFHGARLSLVIGVVATSIAIALGVLVGALAGYYGGLVDDALMRITDAFQTL 120
             GRD+  +   G R+SL++G++   +A+ +G L GA +G+ GG  D  +MRI +    +
Sbjct: 86  ALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAI 145

Query: 121 PNFLLLLLLIAVFGSRIETVVIAIGIVSWPAPARLTRAEFLSLRGREFVQAARLAGLRDL 180
           P   L+++L+  FG  I  + +AIG ++W   AR+ R + LSLR +EF++AA + G+   
Sbjct: 146 PFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKW 205

Query: 181 RLIFREILPNALPPIIVYASVVMATAILLESALAFLNLS-DPNVSSWGNLIGQGRGVLRS 239
            +I R I+PN L  + VY+++++ + IL ES L+FL L     ++SWG L+ +G   +  
Sbjct: 206 NIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEV 265

Query: 240 EWYVSAIPGFAILLTVLAVSLVGQGLNDALNPR 272
             +    P   ++LT+   + VG GL DAL+P+
Sbjct: 266 AIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPK 298