Pairwise Alignments

Query, 707 a.a., Radical SAM (NCBI) from Rhodospirillum rubrum S1H

Subject, 789 a.a., YgiQ family radical SAM protein from Vibrio cholerae E7946 ATCC 55056

 Score =  897 bits (2319), Expect = 0.0
 Identities = 447/725 (61%), Positives = 540/725 (74%), Gaps = 34/725 (4%)

Query: 10  YKPFWAKRLGTAPFLPMSRAEMDALGWDACDIIVVTGDAYVDHASFGMAVIGRVLEAQGF 69
           YK +WA+  GTAPFLP SR EMD LGWD+CD+I+VTGDAYVDH SFGMA+IGR+LEAQGF
Sbjct: 11  YKKYWAECFGTAPFLPTSREEMDQLGWDSCDVIIVTGDAYVDHPSFGMAIIGRLLEAQGF 70

Query: 70  RVGIISQPDWTSADPFRALGRPTLFFGVTAGNMDSMVNRYTSDRKIRKDDAYTPGAEGGR 129
           RVGII+QP+W + D F  LG+P LFFGVTAGNMDSM+NRYT+D+KIR DDAYTP  +GG 
Sbjct: 71  RVGIIAQPEWQTKDAFMTLGKPNLFFGVTAGNMDSMINRYTADKKIRHDDAYTPNNKGGM 130

Query: 130 RPDRAVTVYSQRCREAFRDVPIVLGGIEASLRRVAHYDYWSDKVRRSVMLDSKADILLFG 189
           RPDR   VYSQRCREA++DVPIVLGGIEASLRRVAHYDYWSDKVRRS++LD+KADILLFG
Sbjct: 131 RPDRCSLVYSQRCREAYKDVPIVLGGIEASLRRVAHYDYWSDKVRRSILLDAKADILLFG 190

Query: 190 NAERALIELAHRLAKGEAISTIRDLRGTAYMLPRVPEGWAVLDASDVD-ADSGAMPRGPL 248
           NAERAL+E+AHRLA GE+I+ + D+RGTA  L +VPE + ++D++ +D  +   +P  P 
Sbjct: 191 NAERALVEVAHRLANGESINKMVDIRGTAVNLAQVPEHFKIIDSTRIDQPNKPFVPSNPY 250

Query: 249 GV---------------------------PAVIRLPSYEVVRDDPVQYTHASRVGHLESN 281
            V                              +RLPS+E + +D + Y HASRV HLE+N
Sbjct: 251 EVETQCATKGDEKEEAQPITIRPSRHDAKTTAVRLPSFEKLVNDRILYAHASRVLHLETN 310

Query: 282 PGHARPLVQAHGDREVWLNPPPLPLETGEMDRVFELPYARAPHPSYGGARIPAWEMIRFS 341
           P   R LVQ HGDRE+W+N  P+PL T EMD VF L YAR PHP YG A+IPA++MI+ S
Sbjct: 311 PYSGRALVQRHGDRELWVNQAPIPLTTEEMDFVFGLYYARVPHPKYGDAKIPAYDMIKTS 370

Query: 342 VNVMRGCFGGCSFCSITEHEGKVIQSRSEGSILREIEQIRDKTEGFTGVVSDLGGPTANM 401
           VN+MRGCFGGCSFCSITEHEG++IQ+RS+ SI+ E+++IRDK  GFTGV+SDLGGPTANM
Sbjct: 371 VNIMRGCFGGCSFCSITEHEGRIIQNRSQESIINELKEIRDKVPGFTGVISDLGGPTANM 430

Query: 402 WRLNCSDPKIQAVCRRWSCVYPDICKNLETDQTPLVDLYRKARAIQGVKKITIASGLRYD 461
           +RL CSDPK +A CRR SCV+P IC  L TD    +DLYR AR + G+KK+ IASG+RYD
Sbjct: 431 YRLGCSDPKAEANCRRPSCVFPGICHKLNTDHKHTIDLYRAARDVDGIKKVVIASGVRYD 490

Query: 462 LAVKTPAYVKELVTHHVGGYLKIAPEHTEDGPLALMMKPGMGAYDRFRALFETFSKQAGK 521
           LA+++P YV+ELVTHHVGGYLKIAPEHTE GPL++MMKPGMG YDRF+ LFE +S +AGK
Sbjct: 491 LAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLSMMMKPGMGTYDRFKELFEKYSAEAGK 550

Query: 522 QQFLIPYFIAAHPGTTDEDMMNLALWLKRNHFRADQVQTFLPSPMSLATAMYHGERNPLK 581
           +Q+LIPYFIAAHPGT DEDM+NLALWLK N++R DQVQ F PSPM  ATAMYH E NPLK
Sbjct: 551 KQYLIPYFIAAHPGTEDEDMVNLALWLKSNNYRCDQVQNFYPSPMCNATAMYHAEVNPLK 610

Query: 582 PVRRDGP-VVATAKGLRQRRLHKAFLRYHDPENWPMLREALRQMGRTDLIGMSKKHLIPG 640
            V+   P  V  AKG  QRRLHKA LRYHDP NWPM+REAL  MG+  LIG   + LIP 
Sbjct: 611 RVKYKKPEKVPVAKGEAQRRLHKALLRYHDPANWPMIREALIAMGKRHLIGDRPECLIP- 669

Query: 641 HQPTGTGLAGGEGARAGRKNGAQTFLTQQTRQGQGPYDPTRGAPSCPRDAA-PGAKPGRG 699
                + L     +R   ++GA  F T+ T    G +D  RG  S  +     G K  +G
Sbjct: 670 --EKDSDLVTPAQSRKSGRHGANRFATKHTHSQPG-FDALRGNKSGGQGRPNSGNKSNQG 726

Query: 700 RPRRS 704
           +P  S
Sbjct: 727 KPAGS 731