Pairwise Alignments

Query, 599 a.a., ErfK/YbiS/YcfS/YnhG (NCBI) from Rhodospirillum rubrum S1H

Subject, 520 a.a., L,D-transpeptidase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  109 bits (273), Expect = 2e-28
 Identities = 76/294 (25%), Positives = 136/294 (46%), Gaps = 57/294 (19%)

Query: 341 LERWRLLPRALGQTHLLVNVPQYQLYLNEGRTTVLSMRVAVGRQ---------------- 384
           +ER+R      G  ++ VN+P ++L   +   TV++M+V VG +                
Sbjct: 229 MERFRWKMPETGDNYVQVNIPDFRLTWLDKTDTVITMKVCVGGKRENGYEDKLKAFAKSG 288

Query: 385 -------DFETPLFSDTLRYMEFNPYWNVPISIAQAEVIPKQIENSAYLAKKGFTVLPRG 437
                  + ETPL    +  ++ NP WN+P+SIAQ+E+     ++  YL+     V  + 
Sbjct: 289 NLDDKPKNHETPLLFSKINSIQANPIWNIPVSIAQSEIYWMARKDPYYLSNSNIKVYYK- 347

Query: 438 VEGWDDGVGH-ESVDWKADAARS--YRLRQDPGPANPLGTVKFMFPNEYAVYLHDTNSRG 494
               D  +G  ++++W   +     ++ +Q  G  N LG  KF+F N  ++YLHDTN++ 
Sbjct: 348 ----DKLIGEPDTINWNRYSRDKLPFKFKQGSGGGNALGKFKFIFDNSSSIYLHDTNNKN 403

Query: 495 VFDRSARAVSHGCVRVQEPALLA------NYILERFTDRIGKTAADFS------------ 536
            F+ S RA+SHGCVR+++P   A      +Y  ++    +     D +            
Sbjct: 404 GFNLSNRAISHGCVRIEKPLEFAELLVKDSYTYDKLRAEVDLPPIDSTHVKWYKKRMAQK 463

Query: 537 GPTPKVVRL-------NRPLPIHLVYITAWGGEGGKVAFVRDIYAKDRAIRQAL 583
             T K  +L        + +P+ + YITAW  +  ++ +  D+Y  D  +  A+
Sbjct: 464 ADTLKTFQLKPAWFAPKKNVPLIITYITAW-AQNDRIEYRPDVYGMDEKLWVAM 516