Pairwise Alignments

Query, 262 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

Subject, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  187 bits (476), Expect = 3e-52
 Identities = 112/259 (43%), Positives = 161/259 (62%), Gaps = 16/259 (6%)

Query: 4   APMIEVNNLAVAF-------GDGKRVVRAVRAVSFRVEAGESFGLVGESGSGKSTVLRAV 56
           AP+++  ++ V F           +   AV+ +S  ++ GE+ G+VGESGSGKST+ RA+
Sbjct: 274 APLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRAL 333

Query: 57  AGLFDHWTGDIVVNNQ---AQGAKRDGAFYRLVQMVFQDPYGSLHPKHTIDRILSEPLAV 113
            GL    TG I    Q   A   K+  A  + +QMVFQDPYGSL P+ T+  I++E L V
Sbjct: 334 IGLLPS-TGQIAFKGQDFRALSEKQRLALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLV 392

Query: 114 HR--LDQPER--RIREVLDQVQLGASYRFRYPHQLSGGQRQRVAIARALILSPRILLLDE 169
           H+  + + ER  R R  L++V+L  +   RYPH+ SGGQRQR+AIARALIL P  +LLDE
Sbjct: 393 HQPHISKLERMQRARRALEEVRLDPNSINRYPHEFSGGQRQRIAIARALILEPSFILLDE 452

Query: 170 PTSALDVSIQAEILNLLADIGRERAMTLLLVSHDLGVVAHMCDRLAVMRNGEVVELASRD 229
           PTSALD S+Q  ++ LL +I + R +  L +SHDL VV  + DR+ VM+ G+V+E  S +
Sbjct: 453 PTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAE 512

Query: 230 DLRAGRLDHPYSRQLLLAS 248
            +      H Y+++L+ AS
Sbjct: 513 SI-FHNPQHEYTKKLIAAS 530



 Score =  160 bits (406), Expect = 4e-44
 Identities = 105/276 (38%), Positives = 155/276 (56%), Gaps = 21/276 (7%)

Query: 1   MTHAPMIEVNNLAVAFGDGKRVVRAVRAVSFRVEAGESFGLVGESGSGKSTVLRAVAGLF 60
           M+  P+++V NL+V+F     VV AV+ VSF +  GE+  +VGESGSGKS    A+  L 
Sbjct: 1   MSPNPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLL 60

Query: 61  D-----HWTGDIVVNNQAQGAKRDGAFYRL----VQMVFQDPYGSLHPKHTIDRILSEPL 111
                 H    I+   +    K D    R+    + M+FQ+P  SL+P   +   ++E +
Sbjct: 61  PKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAI 120

Query: 112 AVHR---LDQPERRIREVLDQVQL----GASYRFRYPHQLSGGQRQRVAIARALILSPRI 164
             HR    +Q ++R+ E+   V L    GA  +F  PH+ SGGQ QR+ IA ALI  P I
Sbjct: 121 RCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKF--PHEFSGGQLQRIMIAMALINEPDI 178

Query: 165 LLLDEPTSALDVSIQAEILNLLADIGRERAMTLLLVSHDLGVVAHMCDRLAVMRNGEVVE 224
           L+ DEPT+ALDV++QAE+L L+ +I     M +L ++HDLGVV  + DR+ VM  G+VVE
Sbjct: 179 LIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVE 238

Query: 225 LASRDDLRAGRLDHPYSRQLL--LASRGYDRAVIDA 258
             S + L   + +H Y+R L+  +     D   +DA
Sbjct: 239 QGSTEQLFL-QPEHDYTRMLINSIPKGSKDPVAVDA 273